Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F02
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical pr...   248   3e-66
Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic in...    28   4.5  
Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical pr...    27   7.9  

>Z69302-5|CAA93262.1|  189|Caenorhabditis elegans Hypothetical
           protein F40F8.10 protein.
          Length = 189

 Score =  248 bits (606), Expect = 3e-66
 Identities = 119/152 (78%), Positives = 133/152 (87%)
 Frame = +3

Query: 153 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 332
           RPFEK RLDQELK+IG +GL+NKREVWRVKYTLA++RKAARELLTLE+KDPKRLFEGNAL
Sbjct: 17  RPFEKERLDQELKLIGTFGLKNKREVWRVKYTLAKVRKAARELLTLEDKDPKRLFEGNAL 76

Query: 333 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSXXXXXXXXXXXXXXV 512
           LRRLV+IGVLDE +MKLDYVLGLK+EDFLERRLQTQVFK GLAKS              V
Sbjct: 77  LRRLVKIGVLDETKMKLDYVLGLKVEDFLERRLQTQVFKLGLAKSIHHARILIKQHHIRV 136

Query: 513 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGR 608
           R+QVV++PSFIVRLDS KHIDFSL+SP+GGGR
Sbjct: 137 RRQVVDVPSFIVRLDSQKHIDFSLQSPYGGGR 168


>Z72514-3|CAA96673.1|  741|Caenorhabditis elegans Hypothetical
           protein T10B10.3 protein.
          Length = 741

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = +1

Query: 40  PFITSFLILIGEQCVRARQDGEQQSTVGIFKDVRDTSXVLLKRHVLTKS*RSSES 204
           P++ S L ++ E C+   Q+GE+  + G  + + +   + +K+ V+ +     ES
Sbjct: 614 PYMASCLAVVTETCIALVQEGEKFWSDGFLRLLNEVGGINVKQSVVVRQPEDKES 668


>Z78063-3|CAB01502.1|  236|Caenorhabditis elegans Hypothetical
           protein F45D3.3 protein.
          Length = 236

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 368 KTDETRLCAWSE---D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHPI 538
           KTDE    A S+   D    G +SA A V + P   + S  NFD  K  SC    C  PI
Sbjct: 107 KTDEIVESAESDSSSDTDYFGEASASAPVSN-PALTYLSGANFDNVKQPSCQMLGCTGPI 165


>AC024867-3|AAK68601.2|  327|Caenorhabditis elegans Eukaryotic
           initiation factor protein3.I protein.
          Length = 327

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = -2

Query: 429 DDAPRSPQSSDQAHNRVSSVFHPVLQYEPDDVEGHY--LRTISWGPS 295
           +DA +  Q+S  A +  + ++H V + E    +GH+  + T++W PS
Sbjct: 252 EDAMQVTQTSVSAGHFEAKIYHMVFEEEFARFKGHFGPINTMAWHPS 298


>Z48795-7|CAA88731.1|  347|Caenorhabditis elegans Hypothetical
           protein R05H5.1 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 144 VTYVFENTDGTLLFTILASSH 82
           + YVF+N+D  LLF IL   H
Sbjct: 160 LVYVFDNSDSDLLFQILTRVH 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,881
Number of Sequences: 27780
Number of extensions: 278532
Number of successful extensions: 789
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)