Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_F01
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   124   1e-29
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   120   1e-28
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   113   1e-26
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    27   1.3  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.1  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    26   4.1  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    25   9.4  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  124 bits (298), Expect = 1e-29
 Identities = 63/131 (48%), Positives = 80/131 (61%)
 Frame = +1

Query: 139 SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKXXREIFKRAEQYVKEYRIKERD 318
           SK+    PES+LK            +    +++++  K    I KRAE Y  EYR  ER+
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69

Query: 319 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVRLNN 498
           +I L R+AR  GNYYVP E KL FVIRIRGIN + PK RK++QL  L QINNGVFV+ N 
Sbjct: 70  QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129

Query: 499 ATVNMLRIAXP 531
           AT  ML++  P
Sbjct: 130 ATKEMLQVVEP 140


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  120 bits (290), Expect = 1e-28
 Identities = 59/124 (47%), Positives = 77/124 (62%)
 Frame = +1

Query: 160 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKXXREIFKRAEQYVKEYRIKERDEIRLARQ 339
           PES+LK            +    +++S+  K    I KRAE Y  EYR  ER++I LAR+
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75

Query: 340 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVRLNNATVNMLR 519
           AR  GNY+VP E KL FV+RIRGIN + PK RK++QL  L QINNG+FV+ N A   ML+
Sbjct: 76  ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135

Query: 520 IAXP 531
           +  P
Sbjct: 136 VVEP 139


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  113 bits (273), Expect = 1e-26
 Identities = 55/124 (44%), Positives = 76/124 (61%)
 Frame = +1

Query: 160 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKXXREIFKRAEQYVKEYRIKERDEIRLARQ 339
           PE +LK            ++  + ++ +  K  +E FKRAE ++  YR +ER+ IRL R 
Sbjct: 15  PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74

Query: 340 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFXLRQINNGVFVRLNNATVNMLR 519
           A+N+G+ +VP E KL FVIRI G+  + PK+RKVL+L  L +INN VFVR N A   MLR
Sbjct: 75  AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134

Query: 520 IAXP 531
           I  P
Sbjct: 135 IVEP 138


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 241 SAIKXXREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 357
           +++K  REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 274 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 375
           +A Q   ++ +     +RL     N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +2

Query: 122 SKGRKTVRSCLLYQSQCSSIVRGXRLFALXDYRLR*RGVLLPSRXXGKSSRGLNSTSR 295
           S+G+   ++C L+Q+ C    R  R   +   +    G+ LP +   K   G  S  R
Sbjct: 18  SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 356 LPRLRACLASLISSRSLMRYSLTYCSALLKISLXFLM 246
           L  L   L S   SR+L R  L+YC  L   S+ +LM
Sbjct: 367 LTDLSVILLSGSFSRNLERVHLSYCIGLTAKSVSYLM 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,792,639
Number of Sequences: 5004
Number of extensions: 29778
Number of successful extensions: 63
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)