Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_E22
         (317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0274 - 2901033-2901778,2902475-2902634                           24   1.8  
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081...    26   7.4  
09_02_0308 + 7137099-7137132,7137495-7137611,7138252-7138319,713...    25   9.7  

>10_01_0274 - 2901033-2901778,2902475-2902634
          Length = 301

 Score = 24.2 bits (50), Expect(2) = 1.8
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
 Frame = +2

Query: 242 HHXPYDLRRKSP-PAYHXPGPSCACS 316
           H  P    +  P P Y  P P C+CS
Sbjct: 165 HRKPMPEYQPPPSPVYGTPAPGCSCS 190



 Score = 22.2 bits (45), Expect(2) = 1.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 83  LPSRTQSSEPCESVPI 130
           LPS T SS  C SV I
Sbjct: 138 LPSSTSSSPECSSVAI 153


>04_04_1273 -
           32307273-32307569,32307659-32307791,32307874-32308105,
           32308220-32308436,32308594-32308718,32309416-32310757
          Length = 781

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 30  LRVLTYVDRGEKAVIEYHYLLGHNRVNHV 116
           LR+L Y + G + ++ Y Y+   +  NH+
Sbjct: 532 LRLLAYCNEGNERILVYAYMKNKSLDNHI 560


>09_02_0308 +
           7137099-7137132,7137495-7137611,7138252-7138319,
           7138413-7138538,7138650-7139619,7139641-7139737,
           7140026-7140113,7140336-7140396,7140425-7140447,
           7140663-7140776,7141193-7141306,7144731-7144825,
           7146506-7146824,7147166-7147309,7147463-7147564,
           7147868-7147971,7148121-7148247,7148804-7148845,
           7148939-7149091,7149326-7149426,7149807-7150227
          Length = 1139

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 126 GTDSHGSLDCVLEGSGIR*P 67
           GT   GS++CV  GSG+  P
Sbjct: 602 GTKGGGSMECVRSGSGVLDP 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,604,016
Number of Sequences: 37544
Number of extensions: 80252
Number of successful extensions: 222
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)