Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_E18
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 177 1e-45
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 176 2e-45
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 1.0
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy... 26 4.1
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 5.4
SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyce... 25 7.2
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 25 9.5
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 177 bits (430), Expect = 1e-45
Identities = 88/123 (71%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Frame = +1
Query: 238 RAVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 417
+ VL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL IV++G Q+IPGL
Sbjct: 65 QGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGL 124
Query: 418 TDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRL 594
TD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK KP KAPKIQRL
Sbjct: 125 TDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRL 181
Query: 595 VTP 603
VTP
Sbjct: 182 VTP 184
Score = 98.3 bits (234), Expect = 8e-22
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +3
Query: 45 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 224
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 225 FPMKQG 242
FPM QG
Sbjct: 61 FPMFQG 66
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 176 bits (429), Expect = 2e-45
Identities = 87/123 (70%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Frame = +1
Query: 238 RAVLTNSRVRLLMSKGHSCYRPRRDGERKRKSVRGCIVDANLSVLALVIVRKGAQEIPGL 417
+ VL RVRLL+ GH CYRPRRDGERKRKSVRGCIV +L+VLAL I+++G Q+IPGL
Sbjct: 65 QGVLLPHRVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGL 124
Query: 418 TDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIQRL 594
TD VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK KP KAPKIQRL
Sbjct: 125 TDVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQRL 181
Query: 595 VTP 603
VTP
Sbjct: 182 VTP 184
Score = 98.3 bits (234), Expect = 8e-22
Identities = 42/66 (63%), Positives = 51/66 (77%)
Frame = +3
Query: 45 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 224
MKLN+SYPA G QKL E+ D+ +LR+F EKRMG EV D +G E+ GYV ++ GGNDKQG
Sbjct: 1 MKLNISYPANGTQKLIEIDDDRRLRVFMEKRMGQEVPGDSVGPEFAGYVFKITGGNDKQG 60
Query: 225 FPMKQG 242
FPM QG
Sbjct: 61 FPMFQG 66
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 1.0
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -2
Query: 278 DIRRRTRLFVRTALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVKDTKLVL-- 105
+I R RLF+R ALF + V+ S T + ++ + L GA A F+ D L+
Sbjct: 468 NIERHFRLFIRLALFCVLTTYNVSLSQT-ILLTSIMSVVFLLQTGALAPFINDNPLIQSG 526
Query: 104 VHHFEQLLASRCRVRN 57
+ H L R RN
Sbjct: 527 MRHIRNLQDEYRRRRN 542
>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 26.2 bits (55), Expect = 4.1
Identities = 22/88 (25%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Frame = -2
Query: 452 LGPRRRGTFPSVNPGISWAPLRTITRAKTERLASTIHPRTDLRFLSPSRRGL*HEWPFD- 276
L PRR PSV+ G S + +T + ++L + ++ + L+ L P ++ P
Sbjct: 91 LAPRRTSPLPSVSAGQS--HINIVTASGAKKLTNDLYIKAVLK-LCPELVIPLNDTPTSP 147
Query: 275 --IRRRTRLFVRTALFHRESLLVVAASD 198
++R+ ++ R+ + E LL + A+D
Sbjct: 148 PGVKRKPKIVERSVNWTTELLLALKATD 175
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/64 (31%), Positives = 28/64 (43%)
Frame = -1
Query: 558 SIFFSFLGWEHAFDDITTYIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNN 379
S+ FS G A +I + K E + GSTFG +G R++ L H+N
Sbjct: 79 SVRFSPNGQYLASGSDDRVVIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDN 135
Query: 378 KSQD 367
QD
Sbjct: 136 DIQD 139
>SPBC1271.14 |||glutamate N-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 445
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 114 ACARPPLRTTSGIPLPGTKRLTS*LRSIPSNV 19
A PP T S IP GT+ L + P NV
Sbjct: 367 AAVNPPATTVSFIPADGTEPLKLLVNGEPQNV 398
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 65 PGNGMPEVVRSGGRAQASYLLR 130
PG+G+P +V R AS +LR
Sbjct: 867 PGSGLPLIVNENTRLSASAMLR 888
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,725,513
Number of Sequences: 5004
Number of extensions: 56539
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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