Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_E14
(334 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750 58 2e-09
10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865 57 3e-09
10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297 57 3e-09
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222... 36 0.006
02_02_0236 + 8135641-8135795,8136167-8136557,8136640-8136931,813... 28 2.1
06_03_0630 + 22926652-22928133 27 4.9
03_06_0201 + 32318928-32319202,32319302-32319482,32319915-323199... 27 4.9
01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592 26 6.4
11_02_0134 - 8681176-8681193,8681452-8681987,8682028-8682544 26 8.5
05_01_0269 + 2062467-2062475,2063252-2063303,2063668-2063743,206... 26 8.5
03_02_0193 + 6312518-6312554,6312948-6313091,6313214-6313368,631... 26 8.5
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388... 26 8.5
>06_01_0373 + 2689317-2689439,2690597-2690734,2691616-2691750
Length = 131
Score = 58.0 bits (134), Expect = 2e-09
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Frame = +3
Query: 126 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 293
MSWQ YVD LM +T AAI GHDG+VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQAYVDDHLMCEIDGNHLTAAAIVGHDGSVWAQSPNFPQYKPEEITGIMKDFDEPGSL 60
Query: 294 TSGGVTIAGTXYI 332
G+ + GT Y+
Sbjct: 61 APTGLFLGGTKYM 73
>10_05_0039 - 8461234-8461368,8461502-8461639,8461743-8461865
Length = 131
Score = 57.2 bits (132), Expect = 3e-09
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +3
Query: 126 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 293
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 294 TSGGVTIAGTXYI 332
G+ + T Y+
Sbjct: 61 APTGLFLGPTKYM 73
>10_05_0037 + 8451675-8451797,8451901-8452038,8452163-8452297
Length = 131
Score = 57.2 bits (132), Expect = 3e-09
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Frame = +3
Query: 126 MSWQDYVDKQLMAS---RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLL 293
MSWQ YVD+ LM +T AAI GHDG VWA+S F + +E+ I+ F+ L
Sbjct: 1 MSWQTYVDEHLMCEIEGHHLTSAAIVGHDGTVWAQSAAFPQFKPEEMTNIMKDFDEPGFL 60
Query: 294 TSGGVTIAGTXYI 332
G+ + T Y+
Sbjct: 61 APTGLFLGPTKYM 73
>12_02_0932 +
24519204-24519380,24520074-24520128,24520251-24522202,
24522288-24522446,24522878-24523049,24523131-24523429,
24524037-24524285
Length = 1020
Score = 36.3 bits (80), Expect = 0.006
Identities = 15/31 (48%), Positives = 22/31 (70%)
Frame = +3
Query: 219 KSEGFEISKDEVAKIVAGFENESLLTSGGVT 311
K+ GF+I DE+ IV G +++ L+T GGVT
Sbjct: 92 KAAGFQICADELGSIVEGHDSKKLITHGGVT 122
>02_02_0236 +
8135641-8135795,8136167-8136557,8136640-8136931,
8137117-8137271,8137363-8137451,8137623-8137967,
8139046-8139169,8139424-8139581,8139673-8139757,
8140094-8140306,8141314-8141375,8141466-8141951,
8142472-8142568
Length = 883
Score = 27.9 bits (59), Expect = 2.1
Identities = 11/42 (26%), Positives = 24/42 (57%)
Frame = -1
Query: 304 PPLVSSDSFSKPATIFATSSFEISKPSDFAHTLPS*PAMAAF 179
P V++DS++ + F + ++KP+ F HT + A+ ++
Sbjct: 120 PSFVTTDSYNLDTSPFLSDRSNMNKPNQFLHTSENGAAIGSY 161
>06_03_0630 + 22926652-22928133
Length = 493
Score = 26.6 bits (56), Expect = 4.9
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 168 RCVTKAAIAGHDGNVWAKSEGF-EISKDEVAKIVAGFENESLLTSGGVTIA 317
RCV A G DG V A++E + E + + VA + N SG VT A
Sbjct: 438 RCVELAMAGGGDGGVRARAERWRERAAEAVAAGGSSERNLRAFASGAVTQA 488
>03_06_0201 +
32318928-32319202,32319302-32319482,32319915-32319987,
32320083-32320262,32320908-32321005,32321433-32321530,
32321615-32321657,32322131-32322189,32322238-32322331
Length = 366
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +3
Query: 231 FEISKDEVAKIVAGFENESLL 293
F +S DEVA++V+G+E L+
Sbjct: 110 FTVSNDEVARVVSGWEARGLV 130
>01_05_0300 + 20624757-20625918,20626100-20627118,20627212-20627592
Length = 853
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/34 (26%), Positives = 19/34 (55%)
Frame = +1
Query: 166 LDVSQKLPLPVMMAMCGQSRKASKFQKMKWRRLW 267
+D+ + L + MC RK ++ + +WR++W
Sbjct: 265 IDMEDREMLVREVKMCKARRKQAELEADRWRKMW 298
>11_02_0134 - 8681176-8681193,8681452-8681987,8682028-8682544
Length = 356
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -3
Query: 218 CPHIAIMTGNGSFCD 174
C HI+ M G+G FCD
Sbjct: 12 CLHISSMHGHGGFCD 26
>05_01_0269 +
2062467-2062475,2063252-2063303,2063668-2063743,
2064156-2064288,2064400-2064578,2065228-2065495,
2066250-2066342,2066667-2066776,2066887-2066905,
2066985-2067170
Length = 374
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 310 VTPPLVSSDSFSKPATIFATSSFEIS 233
V PLV S S S+P TIF+ S I+
Sbjct: 270 VMMPLVQSCSLSQPPTIFSCLSLSIT 295
>03_02_0193 +
6312518-6312554,6312948-6313091,6313214-6313368,
6313596-6313871,6313957-6314081,6314234-6314351,
6314663-6314740,6318972-6319059,6319241-6319297,
6319398-6319405
Length = 361
Score = 25.8 bits (54), Expect = 8.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 201 DGNVWAKSEGFEISKDEVAKIVAGFENESLLTS 299
DG + A+S GF I+ DE +K+ + L+ S
Sbjct: 61 DGTLMARSSGFFINWDEESKVCTVLTSARLICS 93
>02_04_0624 +
24538095-24538183,24538429-24538612,24538725-24538886,
24538988-24539225,24539301-24539370,24539439-24539530,
24539799-24539836,24540018-24540039,24540462-24540618,
24540702-24540753,24542144-24542207,24542279-24542362,
24543418-24543543,24543622-24543818,24543903-24544091,
24544186-24544434,24544507-24544556,24544977-24545059,
24545164-24545449,24545751-24545794,24545878-24546626
Length = 1074
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 135 QDYVDKQLMASRCVTKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGF 275
++ ++KQ M CV K G G +W +GF + E +++ F
Sbjct: 381 RELLEKQ-MKDICVEKIHELGEYGLIWTDEDGFLLKPLEPGRLMTKF 426
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,411,096
Number of Sequences: 37544
Number of extensions: 140228
Number of successful extensions: 382
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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