Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_E13
(468 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0168 - 1874297-1874645,1874968-1875137,1875688-1875807,187... 31 0.46
01_06_0866 - 32572002-32572541,32572806-32572984,32574330-325744... 28 4.3
05_06_0271 + 26836396-26836610,26836793-26836872,26837573-268376... 27 7.5
02_05_0562 - 29970207-29970224,29970290-29970364,29971083-299714... 27 7.5
02_01_0264 - 1748883-1748888,1748943-1749017,1749453-1749868,175... 27 7.5
08_02_1133 + 24554037-24554043,24554524-24554797,24554890-245549... 27 10.0
05_03_0682 - 16916437-16916686,16916761-16916822,16917082-169171... 27 10.0
02_01_0263 + 1743661-1743694,1744939-1745236,1745318-1745417,174... 27 10.0
>04_01_0168 -
1874297-1874645,1874968-1875137,1875688-1875807,
1876750-1876812
Length = 233
Score = 31.1 bits (67), Expect = 0.46
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 375 P*TRVNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCIT 238
P T + T A S S + C DSPT +T++G T + S T
Sbjct: 4 PTTSYSTTSAMERSNSTKRCSDSPTVSTSSGRVTTTAWSSTSGAAT 49
>01_06_0866 - 32572002-32572541,32572806-32572984,32574330-32574430,
32574554-32574887,32574915-32575037,32575193-32575394,
32575915-32576097,32576332-32576436,32576553-32576760,
32577025-32577170,32577321-32577443,32577490-32577698,
32577931-32578152,32578189-32578198,32578710-32578763,
32580841-32581052,32581620-32581772,32582071-32582158,
32582192-32582290,32582660-32582907,32584806-32585049
Length = 1260
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/48 (25%), Positives = 20/48 (41%)
Frame = -1
Query: 363 VNVTGASGNSMSRRTCLDSPTFNTATGSFTASCSDMASTCITFNSXGL 220
V + G G + R SP F G+ +C D A+ + ++ L
Sbjct: 1140 VRLAGYEGIDLGRPAATVSPEFRVTLGTANGACVDRAAVTVLYSGVAL 1187
>05_06_0271 +
26836396-26836610,26836793-26836872,26837573-26837641,
26837694-26837985,26838303-26838399,26838478-26838744,
26838832-26838909,26839019-26839120,26839251-26839300,
26839383-26839482,26839645-26839743,26839840-26839968,
26840319-26840427,26840652-26841055,26841140-26841280,
26841373-26841393
Length = 750
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -3
Query: 91 RHDDFXNLLRFLATR----SRATPLHSNLREWR 5
+HDD+ +LRFL R +A + S++ +WR
Sbjct: 210 QHDDYHTMLRFLKARKFDVEKAKSMWSDMLKWR 242
>02_05_0562 -
29970207-29970224,29970290-29970364,29971083-29971441,
29971572-29971713,29971906-29972025,29972139-29972216,
29972330-29972429,29972522-29972571,29972827-29972904,
29973624-29973751,29973776-29973977,29974045-29974144,
29974236-29974551,29974645-29974690,29975526-29975622,
29977254-29977258,29977643-29977708,29978631-29978690,
29979167-29979272,29979513-29979658,29980731-29980813,
29980951-29981056,29996243-29996266,29996378-29996438,
29996467-29996750,29996914-29997096
Length = 1010
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Frame = -3
Query: 91 RHDDFXNLLRFLATR----SRATPLHSNLREWR 5
RHDD+ +LRFL R +A + +++ WR
Sbjct: 519 RHDDYHTMLRFLKARKFDVEKAAHMWADMLHWR 551
>02_01_0264 -
1748883-1748888,1748943-1749017,1749453-1749868,
1750095-1750215,1750423-1750533,1750636-1750737,
1750896-1750989,1751145-1751194,1751323-1751424,
1751794-1751871,1751999-1752028,1752322-1753050
Length = 637
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -3
Query: 91 RHDDFXNLLRFLATR----SRATPLHSNLREWR 5
RHDD+ +LRFL R ++ + S++ +WR
Sbjct: 112 RHDDYHMMLRFLRARKFDIDKSKQMWSDMLQWR 144
>08_02_1133 +
24554037-24554043,24554524-24554797,24554890-24554989,
24555089-24555355,24555455-24555532,24555616-24555717,
24555798-24555847,24555916-24556051,24556374-24556490,
24556659-24556818,24557450-24557811,24558075-24558152,
24558274-24558294
Length = 583
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -3
Query: 91 RHDDFXNLLRFLATR----SRATPLHSNLREWR 5
+HDD+ +LRFL R RA + +++ +WR
Sbjct: 85 KHDDYHMMLRFLKARKFDIDRAMQMWADMLKWR 117
>05_03_0682 -
16916437-16916686,16916761-16916822,16917082-16917147,
16917606-16917737,16917925-16918026,16918146-16918343,
16918409-16918555,16918804-16918914,16919661-16920194,
16920269-16920425,16920511-16920660,16920744-16920883,
16921668-16921784,16922759-16922932,16923020-16923187,
16923323-16923464,16923610-16923728,16924997-16925098,
16925618-16925701,16926843-16927142
Length = 1084
Score = 26.6 bits (56), Expect = 10.0
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Frame = +3
Query: 27 CNGVARERVAK-NLNKLXKSS*RTSFSMVSPFHHHISQRHGIQRQKQNTHAATSSSFVKH 203
C VAR V + N K K+ ++ P HH + + Q+ N+ A + K
Sbjct: 536 CRDVARHFVQRWNYAKRNKAPNEQGIPLLMPHHHMVIPHYKGIGQEINSEADGKQNHDKD 595
Query: 204 C*VQMP 221
C V+ P
Sbjct: 596 CDVKKP 601
>02_01_0263 +
1743661-1743694,1744939-1745236,1745318-1745417,
1745500-1745766,1745859-1745936,1746023-1746124,
1746205-1746254,1746347-1746446,1746550-1746648,
1746742-1746858,1747187-1747313,1747396-1747793,
1747900-1748004
Length = 624
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Frame = -3
Query: 91 RHDDFXNLLRFLATR----SRATPLHSNLREWR 5
RHDD+ +LRFL R +A + +++ +WR
Sbjct: 102 RHDDYHMMLRFLKARRFDIEKAKQMWTDMLKWR 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,970,157
Number of Sequences: 37544
Number of extensions: 243930
Number of successful extensions: 583
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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