Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_E05
         (312 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein L17|Sc...    34   0.006
SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein L17|Sch...    33   0.008
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   1.5  
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch...    25   3.5  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   3.5  
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch...    25   3.5  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   3.5  
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    24   4.6  
SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyce...    24   6.1  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    24   6.1  
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr...    24   6.1  

>SPBC2F12.04 |rpl1701|rpl17, rpl17-1|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 33.9 bits (74), Expect = 0.006
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 112 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECI 213
           HFKN+ E A  I  M L++A  +L NV E K+ +
Sbjct: 25  HFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAV 58



 Score = 25.0 bits (52), Expect = 2.6
 Identities = 20/72 (27%), Positives = 27/72 (37%)
 Frame = +2

Query: 38  MGRYSREPDNPAKSCKARGSNLRWFTLRTHMRPQWQSGRCRSVVLFVTSKT*LKRKSVFI 217
           M RYS  P    K  KARG+ LR     +       +G                +++V  
Sbjct: 1   MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPF 60

Query: 218 PSLHGGVGXCAQ 253
              +GGVG  AQ
Sbjct: 61  RRFNGGVGRTAQ 72


>SPCC364.03 |rpl1702|rpl17-2, rpl17|60S ribosomal protein
           L17|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 187

 Score = 33.5 bits (73), Expect = 0.008
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 112 HFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECI 213
           HFKN+ E A  I  M L++A  +L NV E K+ +
Sbjct: 25  HFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAV 58



 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 38  MGRYSREPDNPAKSCKARGSNLR 106
           M RYS  P    K  KARG+ LR
Sbjct: 1   MVRYSAAPALETKCAKARGAYLR 23


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +2

Query: 107 WFTLRTHMRPQWQS 148
           WFTLRTH    WQ+
Sbjct: 613 WFTLRTHASHIWQN 626


>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1030

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 74  KSCKARGSNLRWFTLRTHMRPQWQSGR 154
           K+ K  G+N RW T   +M+   ++GR
Sbjct: 484 KAQKFSGNNFRWLTSGEYMQMSGRAGR 510


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 97  KPPVVHFKNTYETAMAIRKMPLRRAVRYLKNV 192
           K P+   +NT +    IRK      +RYLK++
Sbjct: 78  KAPIEDMENTKKELEEIRKQSTETELRYLKSL 109


>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 662

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 73  EIMQSAWFKPPVVHFKNTYETAMAIRK 153
           EI++S  F PP++ F N      AI K
Sbjct: 508 EILESNRFSPPIIIFVNLKRNIEAIAK 534


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 100 PPVVHFKNTYETAMAIRKMPLRRAVRYLKNV 192
           PPV+  KN  +T++ +   PL+ +   LK++
Sbjct: 82  PPVLKLKNATQTSIVLEWDPLQLSTARLKSL 112


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 119 RTHMRPQWQSGRCRSVVL 172
           R  +   W+ GRCR VVL
Sbjct: 252 RCRVECNWRHGRCRQVVL 269


>SPBC32H8.02c |nep2|mug120|nedd8 protease Nep2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 415

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
 Frame = -1

Query: 213 NTLFLFNHVFEVTNSTTERHLPDCHCGL-IC 124
           N   L    F V +  T + + DC CGL +C
Sbjct: 204 NLGILLKKEFRVRHMKTPQQINDCDCGLHVC 234


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +3

Query: 99  TSGGSL*EHI*DRNGNQEDAAPS 167
           TS  SL  HI  R+ N  D APS
Sbjct: 438 TSEESLNRHISKRSSNSNDTAPS 460


>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
           heterochromatin assembly Hrr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1015

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 97  KPPVVHFKNTYETAMAIRKMPLRRAVRYLKNVIEK 201
           K  +VH K+  ETA  I+  P  R    LKN  +K
Sbjct: 323 KDYLVHCKSNQETAKHIQNNPRIRINSILKNNSQK 357


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,394,633
Number of Sequences: 5004
Number of extensions: 25845
Number of successful extensions: 57
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 81889040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)