Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_E05
(312 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 50 4e-07
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 40 5e-04
06_03_0721 - 23861426-23861929,23862013-23862219,23862598-238628... 26 5.4
04_04_0918 - 29411239-29411373,29412276-29412526,29412772-294130... 26 5.4
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131 26 5.4
01_06_1371 - 36723967-36724290 26 5.4
05_03_0592 + 15909437-15911002 26 7.2
10_08_0553 - 18720436-18720494,18721102-18721106,18721136-187212... 25 9.5
10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986 25 9.5
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 25 9.5
02_05_0096 + 25785995-25786311,25786716-25786776,25787825-257880... 25 9.5
02_02_0545 - 11376016-11378307 25 9.5
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 50.0 bits (114), Expect = 4e-07
Identities = 23/35 (65%), Positives = 28/35 (80%)
Frame = +1
Query: 109 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECI 213
VHFKNT ETA AIRK+PL +A RYL++VI K+ I
Sbjct: 24 VHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAI 58
Score = 31.9 bits (69), Expect = 0.11
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +2
Query: 38 MGRYSREPDNPAKSCKARGSNLR 106
M +YSRE +NP KS KA G +LR
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLR 23
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 39.5 bits (88), Expect = 5e-04
Identities = 18/31 (58%), Positives = 24/31 (77%)
Frame = +1
Query: 121 NTYETAMAIRKMPLRRAVRYLKNVIEKKECI 213
NT ETA A+RK+PL +A RYL++VI K+ I
Sbjct: 40 NTRETAFALRKLPLVKAKRYLEDVIAHKQAI 70
Score = 36.3 bits (80), Expect = 0.005
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +2
Query: 38 MGRYSREPDNPAKSCKARGSNLR 106
MG+YS EP NP KS KA G +LR
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLR 23
>06_03_0721 -
23861426-23861929,23862013-23862219,23862598-23862852,
23862858-23863212,23863533-23863834,23864006-23864281,
23864854-23865167,23865411-23865683,23865831-23866415,
23866806-23867132,23867270-23867337,23868670-23868746
Length = 1180
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/41 (36%), Positives = 20/41 (48%)
Frame = +2
Query: 35 IMGRYSREPDNPAKSCKARGSNLRWFTLRTHMRPQWQSGRC 157
I G+ S EPD+ CK G L W +R P++ S C
Sbjct: 184 IPGQISWEPDSGFHRCKTEG--LVWPKVRFRKSPKFGSSIC 222
>04_04_0918 -
29411239-29411373,29412276-29412526,29412772-29413009,
29413133-29414251,29414540-29415106
Length = 769
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/45 (28%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Frame = +1
Query: 127 YETAMAIRKMPLRRAVRY--LKNVIEKKECIHSVASRXXWSLCST 255
Y TA+ + ++ V Y + ++++K++ HS+ S WS ST
Sbjct: 170 YNTAVRRNQSLIQEMVHYPLVADIVQKQKKDHSIDSMEIWSKLST 214
>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
Length = 391
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +2
Query: 65 NPAKSCKARGSNLRWFTLRTHMRPQ 139
+PA++ GS LR F LR H+R +
Sbjct: 40 SPAQAAPPAGSPLRPFALRAHLREE 64
>01_06_1371 - 36723967-36724290
Length = 107
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 80 CKARGSNLRWFTLRTHMRPQWQSGR 154
C R ++L W LR R W+SGR
Sbjct: 62 CHYRLAHLPWGVLRRSHRSPWESGR 86
>05_03_0592 + 15909437-15911002
Length = 521
Score = 25.8 bits (54), Expect = 7.2
Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 194 LKRKSVFIPSLHGGVG-XCAQPNSLAN 271
++R+ +P HGG G C P+SLA+
Sbjct: 366 MRRRFGLLPGRHGGGGACCGSPSSLAD 392
>10_08_0553 -
18720436-18720494,18721102-18721106,18721136-18721257,
18721390-18721478,18722136-18722316,18722403-18722654,
18722755-18722993,18723680-18723914,18724072-18724132,
18724632-18724987
Length = 532
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 5 FLSYFLLREIIMGRYSREPDNPA 73
F YFL RE++MG Y + + P+
Sbjct: 149 FEDYFLKRELLMGIYEKGFERPS 171
>10_02_0154 - 5923251-5923604,5924167-5925567,5925639-5925986
Length = 700
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 162 PSCCSLPQKRD*KERVYSFRRFTXXLVXVLN 254
PSC S+P++ E V+SF +F V N
Sbjct: 560 PSCSSIPRREKLAEIVWSFCQFALGSVKAPN 590
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 5 FLSYFLLREIIMGRYSREPDNPA 73
F YFL RE++MG Y + + P+
Sbjct: 126 FEDYFLKRELLMGIYEKGFERPS 148
>02_05_0096 +
25785995-25786311,25786716-25786776,25787825-25788059,
25788292-25788530,25789700-25789951,25790043-25790223,
25790864-25790952,25791269-25791342,25791481-25791584,
25791919-25791957,25792324-25792436
Length = 567
Score = 25.4 bits (53), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +2
Query: 5 FLSYFLLREIIMGRYSREPDNPA 73
F YFL RE++MG Y + + P+
Sbjct: 136 FEDYFLKRELLMGIYEKGFERPS 158
>02_02_0545 - 11376016-11378307
Length = 763
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -1
Query: 156 HLPDCHCGLICVLKVNHRRFEPRALHDFAGLSGSRE*RPIIISLKR 19
H+ C C + + H++ PRA G G + R + SL R
Sbjct: 573 HIATCLCDMQMPAAITHKKTRPRARKAAGGGDGDGD-RAVATSLSR 617
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,388,514
Number of Sequences: 37544
Number of extensions: 178260
Number of successful extensions: 336
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 388087168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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