Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_E05
(312 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal pro... 49 8e-07
AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal pro... 49 8e-07
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ... 27 2.1
U39653-3|AAL56623.1| 1702|Caenorhabditis elegans Prion-like-(q/n... 26 4.8
AC024831-7|AAY86310.1| 711|Caenorhabditis elegans Hypothetical ... 26 4.8
Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical pr... 26 6.4
U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical pr... 26 6.4
AC024783-3|AAL32245.1| 273|Caenorhabditis elegans Hypothetical ... 26 6.4
AC024783-2|AAL32246.1| 275|Caenorhabditis elegans Hypothetical ... 26 6.4
>AC025721-5|AAL32251.1| 159|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform b protein.
Length = 159
Score = 48.8 bits (111), Expect = 8e-07
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1
Query: 109 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECI 213
VHFKNT+E AMA+R MPLRRA +L +V E KE +
Sbjct: 26 VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIV 60
Score = 38.7 bits (86), Expect = 8e-04
Identities = 17/27 (62%), Positives = 19/27 (70%)
Frame = +2
Query: 47 YSREPDNPAKSCKARGSNLRWFTLRTH 127
YSR P+N KSCKARGS+LR TH
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTH 32
>AC025721-4|AAK29902.1| 187|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 17, isoform a protein.
Length = 187
Score = 48.8 bits (111), Expect = 8e-07
Identities = 22/35 (62%), Positives = 27/35 (77%)
Frame = +1
Query: 109 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECI 213
VHFKNT+E AMA+R MPLRRA +L +V E KE +
Sbjct: 26 VHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIV 60
Score = 43.2 bits (97), Expect = 4e-05
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Frame = +2
Query: 47 YSREPDNPAKSCKARGSNLRWFTLRTHMRPQWQSGR-CRSVVLFVTSKT*LKRKSVFIP- 220
YSR P+N KSCKARGS+LR TH G R F+ +K +P
Sbjct: 6 YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNH---VKEHKEIVPF 62
Query: 221 -SLHGGVGXCAQ 253
HGG+G AQ
Sbjct: 63 RRFHGGIGRAAQ 74
>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
protein F39C12.1 protein.
Length = 5105
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 26 REIIMGRYSREPDNPAKSCKARGSNLRWFTLRTHMRPQWQS 148
R+I+ GR+ E D S K R + F+L HM+ WQ+
Sbjct: 897 RDILYGRFE-ENDKRQSSVKERCTLDLKFSLNNHMKVGWQT 936
>U39653-3|AAL56623.1| 1702|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 65,
isoform a protein.
Length = 1702
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 218 PSLHGGVGXCAQPNSLANKGSLGQKIPEIPL 310
P LH G G + N + LGQ + E+PL
Sbjct: 141 PELHPGTGQSSLRNFIRLDMPLGQALQEVPL 171
>AC024831-7|AAY86310.1| 711|Caenorhabditis elegans Hypothetical
protein Y55F3C.9 protein.
Length = 711
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/58 (22%), Positives = 32/58 (55%)
Frame = +2
Query: 5 FLSYFLLREIIMGRYSREPDNPAKSCKARGSNLRWFTLRTHMRPQWQSGRCRSVVLFV 178
F +F ++ + +YS+ P+ + ++ GS+L+ + T ++ + RC + +LF+
Sbjct: 457 FFRHFSAKKNCLVQYSKIPELQVLNMESIGSSLKSLSYFTSLKREASVLRCLTRILFL 514
>Z75530-8|CAA99792.2| 405|Caenorhabditis elegans Hypothetical
protein C47E8.3 protein.
Length = 405
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = -2
Query: 209 HSFFSITFLR*RTARRSGIFLI-AIAVSYVFLK*TTGGLNHALCMISQGY 63
++F++I F+R + RRSG+F IAV + + G+N+ M+ Y
Sbjct: 44 NTFYTIVFIRNPSLRRSGLFYFGVIAVIDIIM-----GINYIAVMVVPVY 88
>U41028-4|AAA82357.1| 455|Caenorhabditis elegans Hypothetical
protein C25G6.5 protein.
Length = 455
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -1
Query: 216 MNTLFLFNHVFEVTNSTTERHLPDCHCGLICVLKVN 109
+N +FN FE+ NS + CHC +C +N
Sbjct: 287 LNVFHIFN-TFELVNSFSVTTFSICHCLAMCSACLN 321
>AC024783-3|AAL32245.1| 273|Caenorhabditis elegans Hypothetical
protein Y45G5AL.1a protein.
Length = 273
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 73 EIMQSAWFKPPVVHFKNTYETAMAIRKMPLRRAVRY--LKNVIEKKECIHSVASRXXWSL 246
++ + A P V+H+ Y+ + P++ +RY + IE S R +S
Sbjct: 149 KVQKMACAPPSVIHYTTIYDFEFEPTQTPIQVPIRYDEISATIEP-----SPIERMPFSA 203
Query: 247 CSTKQFGQQRVXGPKNPR 300
Q R G KNP+
Sbjct: 204 PDFNQLKLARTMGAKNPQ 221
>AC024783-2|AAL32246.1| 275|Caenorhabditis elegans Hypothetical
protein Y45G5AL.1b protein.
Length = 275
Score = 25.8 bits (54), Expect = 6.4
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 73 EIMQSAWFKPPVVHFKNTYETAMAIRKMPLRRAVRY--LKNVIEKKECIHSVASRXXWSL 246
++ + A P V+H+ Y+ + P++ +RY + IE S R +S
Sbjct: 151 KVQKMACAPPSVIHYTTIYDFEFEPTQTPIQVPIRYDEISATIEP-----SPIERMPFSA 205
Query: 247 CSTKQFGQQRVXGPKNPR 300
Q R G KNP+
Sbjct: 206 PDFNQLKLARTMGAKNPQ 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,822,515
Number of Sequences: 27780
Number of extensions: 148510
Number of successful extensions: 326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 344570176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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