Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_D20
(652 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha... 81 2e-16
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 81 2e-16
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 28 1.3
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo... 26 5.4
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 25 7.2
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 7.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 7.2
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 9.5
>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +3
Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 311
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTL 96
Score = 64.9 bits (151), Expect = 1e-11
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 1/181 (0%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 201
MGI+RD HKR ATG + + ++ + R R + V V R +
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKF--ELGRQPSNTRIGPKRIHEVRVRGGNKKFRAL 58
Query: 202 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYT 378
+ + ++K ++ H + N V+ L K+AIV +DA PFR WYE+HY
Sbjct: 59 RLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118
Query: 379 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGAFAGLRGES 558
+ +G KG K T +S+ RK+ AR +KV+ AL QF G +
Sbjct: 119 ILMG-SKGKKATSTP-----NPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSR 172
Query: 559 P 561
P
Sbjct: 173 P 173
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +2
Query: 530 GRLLACVASRPXQCGRADGYILXGKELEFYLRKI 631
GRL A V+SRP Q GR DGYIL G+EL FYLR++
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 71 KRAPIRKKRKYELGRPAANTRLGPQRIH 154
KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIH 44
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 80.6 bits (190), Expect = 2e-16
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +3
Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 311
R RGGN K+RALRLD+GNFSWGSE ++KTRII V Y+ SNNELVRT TL
Sbjct: 47 RVRGGNKKFRALRLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTL 96
Score = 64.1 bits (149), Expect = 2e-11
Identities = 53/181 (29%), Positives = 80/181 (44%), Gaps = 1/181 (0%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 201
MGI+RD HKR ATG + + ++ + R R + V V R +
Sbjct: 1 MGITRDSRHKRSATGAKRAQYRKKRKF--ELGRQPSNTRIGPKRIHEVRVRGGNKKFRAL 58
Query: 202 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYT 378
+ + ++K ++ H + N V+ L K+AIV +DA PFR WYE+HY
Sbjct: 59 RLDSGNFSWGSEGVSKKTRIIQVAYHPSNNELVRTNTLTKSAIVQIDAAPFRVWYETHYG 118
Query: 379 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGAFAGLRGES 558
+ +G KG K T +S+ RK+ AR +KV+ AL QF G +
Sbjct: 119 ILMG-SKGKKATATP-----TPKSKHVQRKHSARLGDSKVDSALETQFAAGRLYAVVSSR 172
Query: 559 P 561
P
Sbjct: 173 P 173
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/34 (67%), Positives = 27/34 (79%)
Frame = +2
Query: 530 GRLLACVASRPXQCGRADGYILXGKELEFYLRKI 631
GRL A V+SRP Q GR DGYIL G+EL FYLR++
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRM 196
Score = 47.6 bits (108), Expect = 2e-06
Identities = 20/28 (71%), Positives = 24/28 (85%)
Frame = +2
Query: 71 KRAPIRKKRKYELGRPAANTRLGPQRIH 154
KRA RKKRK+ELGR +NTR+GP+RIH
Sbjct: 17 KRAQYRKKRKFELGRQPSNTRIGPKRIH 44
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 27.9 bits (59), Expect = 1.3
Identities = 18/41 (43%), Positives = 24/41 (58%)
Frame = +1
Query: 457 TARKYLARQRLAKVEGALXEQFHTGAFAGLRGESPXSVWSR 579
T RKYL + A +EGA +Q + A +R ES +VWSR
Sbjct: 431 TCRKYLPKMHDANLEGANIDQ--SVLMASVR-ESLPAVWSR 468
>SPAC25H1.06 |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.8 bits (54), Expect = 5.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = -1
Query: 589 VTIGATTLTWATRHASQQTPPC 524
+T+G T+L+W+ RH+ + C
Sbjct: 329 LTLGGTSLSWSWRHSGRIVSAC 350
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 283 LDALYTTSMIRVLRVEHSDPQEKLPVSRR 197
L+ + T S +V R H DP KLP RR
Sbjct: 193 LEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 7.2
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -2
Query: 207 CPDAAHGT*YF--HHVNEXEWIR*GPSLVFAAGRPNSYFLFLRMGARFP 67
CPD + G Y V + ++R PS+++A ++ LF+R+ ++P
Sbjct: 307 CPDPSQGFNYCIREAVFQGYFVRPLPSIIWALFEFSAVALFIRLKMKYP 355
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.4 bits (53), Expect = 7.2
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = +3
Query: 60 HRXGNVR--PYARRGSMS*GVP--LQTPGSVLSVSTPXRSRGGNTKY 188
+R GN PY R ++ +P L G +LSV SRG TKY
Sbjct: 1165 NREGNFLDVPYNTRNFITFSIPRLLYEQGGILSVPGLNTSRGFETKY 1211
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 180 TKYRALRLDTGNFSWGSECSTRKTRI 257
T YRA+ LDTG+ E + K RI
Sbjct: 1133 TVYRAVNLDTGDLMAVKEVALHKPRI 1158
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,172
Number of Sequences: 5004
Number of extensions: 46633
Number of successful extensions: 120
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -