Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_D20
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 93 2e-19
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 92 3e-19
10_02_0015 + 4243218-4243420,4243553-4243745,4243818-4243898,424... 31 0.80
01_02_0013 + 10162478-10163581 29 2.4
01_06_0657 - 30940020-30940034,30940226-30940861 29 4.2
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 5.6
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 5.6
03_04_0037 + 16694760-16695227,16695563-16695642,16695735-166958... 28 5.6
04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157... 27 9.8
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 92.7 bits (220), Expect = 2e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = +3
Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 311
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TL
Sbjct: 48 RVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTL 97
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/40 (70%), Positives = 35/40 (87%)
Frame = +2
Query: 530 GRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
GRLLAC++SRP QCGRADGYIL GKELEFY++K++ + K
Sbjct: 195 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 234
Score = 58.8 bits (136), Expect = 3e-09
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 3/140 (2%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 201
MGISRD HKRRATG + A ++ + + + SS +R V V R +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKL-SSNKTVRRVRVRGGNVKWRAL 59
Query: 202 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYT 378
+ + + + ++ + + + N V+ + L K+AIV VDA PF+QWY +HY
Sbjct: 60 RLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG 119
Query: 379 LPLGRKKGAKLT--EAEEAI 432
+ +GRKK A +AE A+
Sbjct: 120 VDIGRKKKAPAAKKDAEHAL 139
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 68 GKRAPIRKKRKYELGRPAANTRLGPQR 148
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 92.3 bits (219), Expect = 3e-19
Identities = 42/50 (84%), Positives = 46/50 (92%)
Frame = +3
Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 311
R RGGN K+RALRLDTGN+SWGSE TRKTRI+DVVYNASNNELVRT+TL
Sbjct: 48 RVRGGNLKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTL 97
Score = 68.9 bits (161), Expect = 3e-12
Identities = 55/179 (30%), Positives = 86/179 (48%), Gaps = 9/179 (5%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 201
MGISRD HKRRATG + A ++ + + + SS +R V V R +
Sbjct: 1 MGISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKL-SSNKTVRRVRVRGGNLKWRAL 59
Query: 202 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYT 378
+ + + + ++ + + + N V+ + L K+AIV VDA PF+QWY +HY
Sbjct: 60 RLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYG 119
Query: 379 LPLGRKK--------GAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 531
+ +GRKK A+ E E A K+S RK RQ+ ++ + EQF +G
Sbjct: 120 VDIGRKKKAPAAKKDAAEGQEGEAATEEAKKSNHVVRKLEKRQQTRTLDSHIEEQFGSG 178
Score = 68.9 bits (161), Expect = 3e-12
Identities = 28/40 (70%), Positives = 35/40 (87%)
Frame = +2
Query: 530 GRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
GRLLAC++SRP QCGRADGYIL GKELEFY++K++ + K
Sbjct: 178 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGK 217
Score = 35.9 bits (79), Expect = 0.028
Identities = 16/27 (59%), Positives = 19/27 (70%)
Frame = +2
Query: 68 GKRAPIRKKRKYELGRPAANTRLGPQR 148
GK+ RKKRKYELGR ANT+L +
Sbjct: 16 GKQKAWRKKRKYELGRQPANTKLSSNK 42
>10_02_0015 +
4243218-4243420,4243553-4243745,4243818-4243898,
4244267-4244377,4244921-4245211,4245301-4245363,
4245571-4245636,4245761-4245979
Length = 408
Score = 31.1 bits (67), Expect = 0.80
Identities = 21/79 (26%), Positives = 36/79 (45%)
Frame = +1
Query: 400 GAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGAFAGLRGESPXSVWSR 579
G +L EA+ I Y++ +R + V+GAL +F+ GAF + +P W
Sbjct: 52 GDRLEEADCPRIVPAGDAFEVYPYISSRRPSTVQGALLRKFYPGAFGLVECRTPALTWRD 111
Query: 580 RWLHLXRQRTRVLSKKDQV 636
+ R++S D+V
Sbjct: 112 ---YKRSTNERIMSPADRV 127
>01_02_0013 + 10162478-10163581
Length = 367
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +1
Query: 175 EILSTVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQRPL 312
E +S RC P+ G R + A SL + ++HL +C RPL
Sbjct: 240 EYMSPERCA--PMAMAGARVARAADVWSLGITVLHLYQGYCPARPL 283
>01_06_0657 - 30940020-30940034,30940226-30940861
Length = 216
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 36 GSLA*AKGHRXGNVRPYARRGSMS*GVPLQTPGSVLSVSTPXRSRGGNTKYRALRL-DTG 212
G++ A G+R P R GSMS G + GS +S S RG + + A G
Sbjct: 117 GTIGAAAGNRMRGFVPPGRGGSMSNGAGVVGHGSSMSHSAGVSGRGSSMSHGATGYGGFG 176
Query: 213 NFSWGSECSTRKT 251
W + S+ T
Sbjct: 177 GGGWDAGTSSAPT 189
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 216 FSWGSECSTRKTRIIDVVYNASNNELVRTKTLXQE 320
F W C+T ++ V + S +EL+ T + Q+
Sbjct: 728 FQWSGRCTTEDFKLNQVCIDGSRDELLETDVIRQD 762
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 397 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTGA 534
KG+KL + E + + R++ A R LA GAL + H+ A
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHSMA 49
>03_04_0037 +
16694760-16695227,16695563-16695642,16695735-16695828,
16695973-16696071,16696650-16696742,16696822-16696941,
16697422-16697525,16697734-16697806,16698023-16698085
Length = 397
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 536 LLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
+LA AS P +C R + + G + LRK S R K
Sbjct: 109 ILAAAASGPCRCRRKESLVGMGNYISRVLRKSSSDRGK 146
>04_03_0867 -
20414999-20415160,20415255-20415384,20415515-20415702,
20415967-20416001,20416363-20416579,20416737-20416820,
20417609-20417875,20417954-20418061,20418163-20418249,
20418629-20419399
Length = 682
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = +1
Query: 184 STVRCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMN 291
+ + C+W + SLG R Q++K + L ++ + +N
Sbjct: 286 TVIPCMWLVIASLGRRLRQISKEAHISLAMLTVYLN 321
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,839
Number of Sequences: 37544
Number of extensions: 345953
Number of successful extensions: 973
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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