Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_D20
(652 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8 prot... 120 4e-27
BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8 pr... 120 4e-27
AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8 pr... 120 4e-27
AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8 pr... 120 4e-27
AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8 pr... 113 7e-25
BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal pr... 75 2e-13
CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein. 30 6.2
BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying pro... 30 6.2
AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein. 30 6.2
AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens ... 30 6.2
>X67247-1|CAA47670.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 120 bits (289), Expect = 4e-27
Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILS---TV 192
MGISRD+WHKRR TG + + ++ R A ++ R +H V +
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVRVRGGNKKY 55
Query: 193 RCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYES 369
R + V + + + ++ + + + N V+ + L KN IV++D+TP+RQWYES
Sbjct: 56 RALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYES 115
Query: 370 HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 531
HY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 116 HYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 494 RLRVLXKSNSTRGRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
++ L + +G+LLAC+ASRP QCGRADGY+L GKELEFYLRKIK+ + K
Sbjct: 157 KISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>BC070875-1|AAH70875.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 120 bits (289), Expect = 4e-27
Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILS---TV 192
MGISRD+WHKRR TG + + ++ R A ++ R +H V +
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVRVRGGNKKY 55
Query: 193 RCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYES 369
R + V + + + ++ + + + N V+ + L KN IV++D+TP+RQWYES
Sbjct: 56 RALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYES 115
Query: 370 HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 531
HY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 116 HYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 494 RLRVLXKSNSTRGRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
++ L + +G+LLAC+ASRP QCGRADGY+L GKELEFYLRKIK+ + K
Sbjct: 157 KISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-7|CAI13003.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 120 bits (289), Expect = 4e-27
Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILS---TV 192
MGISRD+WHKRR TG + + ++ R A ++ R +H V +
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVRVRGGNKKY 55
Query: 193 RCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYES 369
R + V + + + ++ + + + N V+ + L KN IV++D+TP+RQWYES
Sbjct: 56 RALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYES 115
Query: 370 HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 531
HY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 116 HYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 494 RLRVLXKSNSTRGRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
++ L + +G+LLAC+ASRP QCGRADGY+L GKELEFYLRKIK+ + K
Sbjct: 157 KISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AB062401-1|BAB93488.1| 208|Homo sapiens ribosomal protein S8
protein.
Length = 208
Score = 120 bits (289), Expect = 4e-27
Identities = 69/174 (39%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILS---TV 192
MGISRD+WHKRR TG + + ++ R A ++ R +H V +
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVRVRGGNKKY 55
Query: 193 RCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYES 369
R + V + + + ++ + + + N V+ + L KN IV++D+TP+RQWYES
Sbjct: 56 RALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYES 115
Query: 370 HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 531
HY LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 116 HYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 169
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 494 RLRVLXKSNSTRGRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
++ L + +G+LLAC+ASRP QCGRADGY+L GKELEFYLRKIK+ + K
Sbjct: 157 KISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208
>AL592166-8|CAI13002.1| 188|Homo sapiens ribosomal protein S8
protein.
Length = 188
Score = 113 bits (271), Expect = 7e-25
Identities = 72/171 (42%), Positives = 96/171 (56%), Gaps = 1/171 (0%)
Frame = +1
Query: 22 MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILSTVRCV 201
MGISRD+WHKRR TG + + ++ R A ++ R +H V VR
Sbjct: 1 MGISRDNWHKRRKTGGKRKPYHKK-----RKYELGRPAANTKIGPRRIHTVR----VRGG 51
Query: 202 WTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYESHYT 378
T T + D + + + N V+ + L KN IV++D+TP+RQWYESHY
Sbjct: 52 CTRKTRIID-------------VVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYA 98
Query: 379 LPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 531
LPLGRKKGAKLT EE I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 99 LPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 149
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 494 RLRVLXKSNSTRGRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
++ L + +G+LLAC+ASRP QCGRADGY+L GKELEFYLRKIK+ + K
Sbjct: 137 KISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 188
Score = 56.8 bits (131), Expect = 6e-08
Identities = 32/49 (65%), Positives = 34/49 (69%)
Frame = +3
Query: 177 NTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTLXQEC 323
NTK R+ T G C TRKTRIIDVVYNASNNELVRTKTL + C
Sbjct: 35 NTKIGPRRIHTVRVRGG--C-TRKTRIIDVVYNASNNELVRTKTLVKNC 80
Score = 56.4 bits (130), Expect = 8e-08
Identities = 23/30 (76%), Positives = 27/30 (90%)
Frame = +2
Query: 68 GKRAPIRKKRKYELGRPAANTRLGPQRIHS 157
GKR P KKRKYELGRPAANT++GP+RIH+
Sbjct: 16 GKRKPYHKKRKYELGRPAANTKIGPRRIHT 45
>BC005678-1|AAH05678.1| 80|Homo sapiens Similar to ribosomal
protein S8 protein.
Length = 80
Score = 74.9 bits (176), Expect = 2e-13
Identities = 32/52 (61%), Positives = 41/52 (78%)
Frame = +2
Query: 494 RLRVLXKSNSTRGRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
++ L + +G+LLAC+ASRP QCGRADGY+L GKELEFYLRKIK+ + K
Sbjct: 29 KISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 80
Score = 44.4 bits (100), Expect = 4e-04
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +1
Query: 409 LTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 531
LT EE I+NKKRS+K +KY R++ AK+ L EQF G
Sbjct: 1 LTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQG 41
>CR457284-1|CAG33565.1| 201|Homo sapiens FLJ11749 protein.
Length = 201
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 388 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 519
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>BC010108-1|AAH10108.1| 201|Homo sapiens chromatin modifying
protein 6 protein.
Length = 201
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 388 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 519
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AY329087-1|AAQ91196.1| 201|Homo sapiens VPS20 protein.
Length = 201
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 388 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 519
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
>AK021811-1|BAB13901.1| 201|Homo sapiens protein ( Homo sapiens
cDNA FLJ11749 fis, clone HEMBA1005558, weakly similar to
NUCLEAR PROTEIN SNF7. ).
Length = 201
Score = 30.3 bits (65), Expect = 6.2
Identities = 18/46 (39%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +1
Query: 388 GRKKGAKLTEAEEAIINKKRSQKTARKYLAR--QRLAKVEGALXEQ 519
GRKK +++TE ++AI+ K+ + R+Y R Q+L + E AL Q
Sbjct: 6 GRKKQSRVTEQDKAILQLKQQRDKLRQYQKRIAQQLER-ERALARQ 50
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,237,940
Number of Sequences: 237096
Number of extensions: 1938653
Number of successful extensions: 3975
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3963
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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