Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_D20
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...   135   3e-34
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.9  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.9  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.8  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.8  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.8  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.8  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score =  135 bits (327), Expect = 3e-34
 Identities = 79/174 (45%), Positives = 103/174 (59%), Gaps = 4/174 (2%)
 Frame = +1

Query: 22  MGISRDHWHKRRATGWETCAHTQEEEV*VRASRCKHQARSSAYPLRFVHVVEILS---TV 192
           MGISRDHWHKRRATG +     ++ +  +     +  A +   P R +H V         
Sbjct: 1   MGISRDHWHKRRATGGKRKPIRKKRKFELG----RPAANTKLGPQR-IHTVRTRGGNKKY 55

Query: 193 RCVWTPVTSLGDRNVQLAKPVSLMLCIMHLTMNWCVQ-RPLXKNAIVVVDATPFRQWYES 369
           R +     +    +    +   ++  + + + N  V+ + L KNAIV +DATPFRQWYE 
Sbjct: 56  RALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTLVKNAIVTIDATPFRQWYEG 115

Query: 370 HYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALXEQFHTG 531
           HY LPLGRK+GAKLTEAEE ++NKKRS+K   KY ARQR AKVE AL EQF TG
Sbjct: 116 HYVLPLGRKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATG 169



 Score =  103 bits (248), Expect = 1e-24
 Identities = 47/50 (94%), Positives = 49/50 (98%)
 Frame = +3

Query: 162 RSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYNASNNELVRTKTL 311
           R+RGGN KYRALRLDTGNFSWGSEC+TRKTRIIDVVYNASNNELVRTKTL
Sbjct: 47  RTRGGNKKYRALRLDTGNFSWGSECTTRKTRIIDVVYNASNNELVRTKTL 96



 Score = 71.7 bits (168), Expect = 6e-15
 Identities = 30/40 (75%), Positives = 36/40 (90%)
 Frame = +2

Query: 530 GRLLACVASRPXQCGRADGYILXGKELEFYLRKIKSXRAK 649
           GR+LAC++SRP QCGR DGYIL GKELEFY+R+IKS +AK
Sbjct: 169 GRVLACISSRPGQCGREDGYILEGKELEFYMRRIKSKKAK 208



 Score = 61.3 bits (142), Expect = 8e-12
 Identities = 26/30 (86%), Positives = 29/30 (96%)
 Frame = +2

Query: 68  GKRAPIRKKRKYELGRPAANTRLGPQRIHS 157
           GKR PIRKKRK+ELGRPAANT+LGPQRIH+
Sbjct: 16  GKRKPIRKKRKFELGRPAANTKLGPQRIHT 45


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 366 LIPLPEWSCIYYNNC 322
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 366 LIPLPEWSCIYYNNC 322
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 366 LIPLPEWSCIYYNNC 322
           L P P+WS   Y++C
Sbjct: 104 LQPYPDWSFAKYDDC 118


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 366 LIPLPEWSCIYYNNC 322
           L P P+WS   Y +C
Sbjct: 109 LQPYPDWSFAKYEDC 123


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 366 LIPLPEWSCIYYNNC 322
           L P P+WS   Y +C
Sbjct: 110 LRPYPDWSFAKYEDC 124


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 366 LIPLPEWSCIYYNNC 322
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 366 LIPLPEWSCIYYNNC 322
           L P P+WS   Y +C
Sbjct: 108 LQPYPDWSWANYKDC 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,405
Number of Sequences: 438
Number of extensions: 3542
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)