Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_D19
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.81 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   1.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   4.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.6  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -1

Query: 475 GAGSNLGTHVLDNAIRLPWSIVLGRKLS 392
           G G  L +H++   + +P S+++G  L+
Sbjct: 128 GGGIELISHIISKQLHIPVSVLMGANLA 155


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 365 YPTLKIFRKGELSSEYNGPRESNGIVKY 448
           Y   K++  GEL+S + GP+  + ++ +
Sbjct: 406 YEEYKMYELGELASSFVGPKVKDCLISW 433


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +2

Query: 275 LKTDVPPVALAK 310
           LK+D+PPVA  K
Sbjct: 249 LKSDIPPVAYVK 260


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 305 LAPPEGHRSLTGRRLPHTLA 246
           +APP GH + +   L  TLA
Sbjct: 513 VAPPSGHHASSAPLLAATLA 532


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,480
Number of Sequences: 438
Number of extensions: 3414
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)