Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_D16
(650 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0217 + 1848970-1849251,1849419-1849566,1849638-1849789,185... 60 1e-09
02_05_1316 - 35679456-35679538,35679660-35679722,35679824-356799... 36 0.021
02_05_1317 - 35683659-35683756,35683904-35683966,35684068-356841... 34 0.11
11_06_0442 - 23622633-23623000,23623149-23623721,23624795-236253... 31 1.1
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 30 1.8
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 28 5.6
10_08_1033 - 22444757-22444862,22444965-22445542 28 5.6
05_06_0056 + 25246631-25246913,25247047-25247141,25247593-252476... 28 7.4
04_03_0809 + 19896801-19897170,19897265-19897513,19897850-198979... 28 7.4
03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348... 28 7.4
10_08_0850 + 21050164-21050189,21050874-21050979,21051186-210512... 27 9.8
09_02_0602 - 11118788-11119178,11119262-11119451,11119590-111196... 27 9.8
>01_01_0217 +
1848970-1849251,1849419-1849566,1849638-1849789,
1850146-1850328,1850690-1850765,1850956-1851033,
1851584-1851669,1852680-1852753,1852920-1852965,
1853211-1853320,1853600-1853774,1854501-1854749
Length = 552
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Frame = +3
Query: 303 GQEIKVEGATVKVHHTPGHTTDHIVLTCLEENILFSGDCILGEGTAVFED-----LYTYM 467
G+ I + ++V PGHT H+ + + N L GD +G+G+A ++ + Y
Sbjct: 319 GENICIGDQQLQVVFAPGHTDGHMGVLHVNTNALIVGDHCVGQGSATLDNRAGGNMKDYF 378
Query: 468 KSLQKILDLKPNIIYPGHGNIVKDPVEKIEYYIAHRNQREEQILEALKTNS 620
++ LD+ P+++ P HG I P + Y+ HR RE IL++++ +
Sbjct: 379 QTTYNFLDMSPHVLIPMHGRINLWPKHMLCGYLRHRRAREVSILQSIENGA 429
>02_05_1316 -
35679456-35679538,35679660-35679722,35679824-35679938,
35680271-35680372,35680667-35680736,35681182-35681273,
35681542-35681622,35681697-35681740,35681829-35681976
Length = 265
Score = 36.3 bits (80), Expect = 0.021
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Frame = +3
Query: 285 IEWLRDGQEIKVEGATVKVHHTPGHTTDHIVLTCLEENILFSGDCILGEGTAVFEDLY-T 461
+EW G GA ++ HTPGHT + L LF+GD + + DL+
Sbjct: 153 VEWKLTGNGPWDIGADFELIHTPGHTEGSVCLFYKPVKALFTGDHVAKSEESDDLDLFLM 212
Query: 462 YMK--------SLQKILDLKPNIIYPGHG 524
Y K S++K+L L PGHG
Sbjct: 213 YSKQSVGLQLDSMRKLLKLDFEWFLPGHG 241
>02_05_1317 -
35683659-35683756,35683904-35683966,35684068-35684182,
35684385-35684486,35684687-35684756,35684878-35684952,
35685188-35685279,35685386-35685493,35685560-35685640,
35685728-35685771,35685858-35685984
Length = 324
Score = 33.9 bits (74), Expect = 0.11
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Frame = +3
Query: 324 GATVKVHHTPGHTTDHIVLTCLEENILFSGDCILGEGTAVFEDLYTY-----------MK 470
GA ++ HTPGHT + L LF+GD + + +DLY + +
Sbjct: 220 GADFELIHTPGHTQGSVCLFYKPVKALFTGDHVAKSEES--DDLYLFLMYSRQPVSLQLD 277
Query: 471 SLQKILDLKPNIIYPGHG 524
S++K+L L PGHG
Sbjct: 278 SMRKLLKLDFEWFLPGHG 295
>11_06_0442 -
23622633-23623000,23623149-23623721,23624795-23625335,
23625807-23625982,23626081-23626804
Length = 793
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 177 LQGTNTYLIGSENPIIWKHKKSSEDSADNELPPSI 281
L GT L+GS P+IW + ++ +S E+PPS+
Sbjct: 76 LTGTIPQLLGSNKPLIWVNLQN--NSLSGEIPPSL 108
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 531 VKDPVEKIEYYIAHRNQREEQILEALKTNSDKNLNEM 641
+K PV IE+Y+ R+Q E+QI + +SDK L ++
Sbjct: 132 MKVPVAAIEFYLDTRSQIEDQIRGFSEPSSDKLLPDL 168
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 327 ATVKVHHTPGHTTDHIVLTCLEENILFSGDCILGEGTA 440
+T V H HT D + C + +L SG CI+ G A
Sbjct: 564 STGDVSHK-SHTEDQVNAVCQKNVVLSSGTCIISNGFA 600
>10_08_1033 - 22444757-22444862,22444965-22445542
Length = 227
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 195 YLIGSENPIIWKHKKSSEDSADNEL-PPSIP 284
Y++GS +W ++ +D A++E+ PP +P
Sbjct: 194 YVLGSYASFLWDAEEDEDDEAEDEMKPPLVP 224
>05_06_0056 +
25246631-25246913,25247047-25247141,25247593-25247629,
25248158-25248219,25248305-25248418,25249248-25249352,
25249441-25249539,25250203-25250359,25250473-25250579
Length = 352
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 519 HGNIVKDPVEKIEYYIAHRNQREEQILEALKTNSDKNLNEMD 644
+ +K PV IE+Y+ R+ E+ I + SDK L ++D
Sbjct: 133 YSTAMKAPVAAIEFYMDVRHTIEDHIRGFAEPTSDKLLPDLD 174
>04_03_0809 +
19896801-19897170,19897265-19897513,19897850-19897900,
19898007-19898267,19898427-19898479,19898746-19898887,
19898972-19899226,19899616-19900640
Length = 801
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -1
Query: 596 YLFFSLISVSYIIF---NFFNGILYYIPMTRVNNVWF*VQYF 480
Y F +ISV +++ +N +++ I + + N W+ VQYF
Sbjct: 250 YTFAPIISVWFLLIAGIGLYNLVVHEITILKAFNPWYIVQYF 291
>03_02_0896 -
12233706-12233801,12234005-12234181,12234741-12234854,
12234928-12235006,12235372-12235533,12235957-12236079,
12236139-12236218
Length = 276
Score = 27.9 bits (59), Expect = 7.4
Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 4/99 (4%)
Frame = +3
Query: 345 HTPGHTTDHIVLTCLEENILFSGDCILGEGTA-VFEDLYTYM-KSLQKILDL--KPNIIY 512
HT GH + ++ E+ +F+GD + G FE M +SL L KP +Y
Sbjct: 123 HTKGHISYYVTSKEEEDPAVFTGDTLFIAGCGRFFEGTAEQMYQSLCVTLGSLPKPTQVY 182
Query: 513 PGHGNIVKDPVEKIEYYIAHRNQREEQILEALKTNSDKN 629
GH VK+ K + N++ +Q LE + + N
Sbjct: 183 CGHEYTVKN--LKFILTVEPDNEKVKQKLEWAQKQREAN 219
>10_08_0850 + 21050164-21050189,21050874-21050979,21051186-21051257,
21051775-21051828,21052077-21052184,21052653-21052802,
21052914-21053258,21053361-21054801,21054844-21055675,
21057060-21057325,21057530-21059603,21060172-21060442,
21060556-21060990
Length = 2059
Score = 27.5 bits (58), Expect = 9.8
Identities = 19/76 (25%), Positives = 37/76 (48%)
Frame = +2
Query: 389 GRKHFIQWRLHIRRGDSCV*RLIHLYEKSAKNIGLKTKHYLPWSWEYSKGSR*KN*ILYS 568
G K F+Q + + +S +L++L ++ K +KT+ + PW W G +
Sbjct: 1608 GIKWFLQGQDVLLGNNSVRQQLVNLTQR--KGFPMKTQFWKPWGWSKLVG------YANA 1659
Query: 569 SQKSKRRTNIRSFENK 616
++ SKR+ + S E +
Sbjct: 1660 NKSSKRKLEVTSIEER 1675
>09_02_0602 -
11118788-11119178,11119262-11119451,11119590-11119658,
11119890-11120016,11120134-11120399,11120760-11120872,
11121693-11121764,11121860-11121998,11124277-11124360,
11125278-11125771,11127604-11128187
Length = 842
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = +3
Query: 450 DLYTYMKSLQKILDLKPNIIYPGHGNIVKDPVEKI 554
D+Y++ L +++ +P II PGHG+IV+ +KI
Sbjct: 725 DVYSFGVVLLEVVTGEPPII-PGHGHIVQRVKQKI 758
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,968,926
Number of Sequences: 37544
Number of extensions: 364573
Number of successful extensions: 823
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 822
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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