Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_D11
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 26 3.1
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 26 4.1
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 4.1
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 25 5.4
SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subu... 25 7.2
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 25 7.2
SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolo... 25 7.2
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 9.5
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 25 9.5
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 25 9.5
SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ... 25 9.5
SPCC1259.07 |||transcriptional regulatory protein Rxt3 |Schizosa... 25 9.5
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 375 VISKLDELNLWKIDGKALLQKFIPMESN 458
V S+L EL++WK K + P+ESN
Sbjct: 232 VDSELTELDIWKNPKKTMFLPVKPLESN 259
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 423 LCHQFSTSSVHQVLILQYL 367
LCHQ S+S +Q L +QYL
Sbjct: 555 LCHQQSSSFTNQDLAIQYL 573
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +3
Query: 30 EPEEF-QDSGEDWTPDADSNEPASRTGRKRVSKAPVN 137
+ EEF +DS + D+NEP+++ K V + VN
Sbjct: 239 DSEEFSEDSDNSSEENKDTNEPSTKDAEKTVPEDVVN 275
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 27 AEPEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 158
A+ ++ D+ TP ADS EP K V+ A +++K K
Sbjct: 344 ADEKQLPDASSQATP-ADSKEPRKEEAEKPVTSATEVSSEKVEK 386
>SPAC22H12.02 |tfg3|taf14|transcription factor TFIIF complex subunit
Tfg3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 241
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +3
Query: 42 FQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTK 146
+ D GE+ D NE G+K+ PV+ K
Sbjct: 143 YSDEGEEARKDKRKNESEVGAGKKKAKAKPVDMDK 177
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 72 DADSNEPASRTGRKRVSKAPVNNTKK 149
D D N S + R S APVNN+++
Sbjct: 344 DVDENISTSSSPRSPASLAPVNNSER 369
>SPAC26F1.14c |aif1|SPAC29A4.01c|apoptosis-inducing factor homolog
Aif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +2
Query: 407 EN*WQSIITEIYPNGIKWKSFTQMYMCVFWGG 502
E W++ TE+Y G T ++C+ GG
Sbjct: 135 EGCWRNKATEVYNKGSVETEVTAPHVCIIGGG 166
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -3
Query: 355 TSDFSKTKFPEWKCFGTS 302
T+ +KTK P W FG S
Sbjct: 980 TTPIAKTKTPRWSSFGIS 997
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +3
Query: 387 LDELNLWKIDGKALLQKF 440
LDEL L K DGK +L F
Sbjct: 134 LDELTLIKFDGKKILSLF 151
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 6/49 (12%)
Frame = +3
Query: 348 SDVKWDGDTV------ISKLDELNLWKIDGKALLQKFIPMESNGRVLHK 476
+DVKW S L LN+W ++ +ALL F + R +HK
Sbjct: 94 NDVKWGSSFASNLIFTCSPLGNLNVWDVNLEALLYDF---NEHSRAVHK 139
>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 343
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 412 LMAKHYYRNLSQWNQMEEF 468
L+ +H Y NLSQ +E+F
Sbjct: 24 LLEQHIYSNLSQCESLEDF 42
>SPCC1259.07 |||transcriptional regulatory protein Rxt3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -3
Query: 469 KTLPFDSIGINFCNNALPSIFHKFSSSSFDITVSPSHFTSDFSK-TKFPEWK 317
KTLP S G + P S+ S + PS+ ++ SK T +P+++
Sbjct: 115 KTLPTQSSGEEEAKYSHPGAPTATSADSISMESRPSNLSTSLSKTTSYPQFQ 166
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,053,535
Number of Sequences: 5004
Number of extensions: 38732
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -