Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_D11
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z79639-6|CAB01919.3| 957|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z79598-9|CAB01869.3| 957|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical pr... 32 0.23
AF519110-1|AAM74224.1| 957|Caenorhabditis elegans EOR-2B protein. 32 0.23
AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein. 32 0.23
AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein. 32 0.23
Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 28 4.9
L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical pr... 27 6.5
>Z79639-6|CAB01919.3| 957|Caenorhabditis elegans Hypothetical
protein C44H4.7b protein.
Length = 957
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 366 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSG 497
G VI K D L +W++D + LLQKF P + R++++ + YSG
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSG 676
>Z79639-5|CAD42645.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 366 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSG 497
G VI K D L +W++D + LLQKF P + R++++ + YSG
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSG 691
>Z79598-9|CAB01869.3| 957|Caenorhabditis elegans Hypothetical
protein C44H4.7b protein.
Length = 957
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 366 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSG 497
G VI K D L +W++D + LLQKF P + R++++ + YSG
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSG 676
>Z79598-8|CAD42646.2| 972|Caenorhabditis elegans Hypothetical
protein C44H4.7a protein.
Length = 972
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 366 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSG 497
G VI K D L +W++D + LLQKF P + R++++ + YSG
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSG 691
>AF519110-1|AAM74224.1| 957|Caenorhabditis elegans EOR-2B protein.
Length = 957
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 366 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSG 497
G VI K D L +W++D + LLQKF P + R++++ + YSG
Sbjct: 627 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSG 676
>AF519109-1|AAM74223.1| 972|Caenorhabditis elegans EOR-2A protein.
Length = 972
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 366 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSG 497
G VI K D L +W++D + LLQKF P + R++++ + YSG
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSG 691
>AF502570-1|AAM74152.1| 972|Caenorhabditis elegans EOR-2 protein.
Length = 972
Score = 32.3 bits (70), Expect = 0.23
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Frame = +3
Query: 366 GDTVISKLDELN----LWKIDGKALLQKFIPMESN--GRVLHKCTCVYSG 497
G VI K D L +W++D + LLQKF P + R++++ + YSG
Sbjct: 642 GTYVICKADMLKEDCAVWRVDNQNLLQKFPPFRDSKANRLVYRSSSTYSG 691
>Z82266-4|CAB05180.1| 227|Caenorhabditis elegans Hypothetical
protein F23B2.6 protein.
Length = 227
Score = 29.9 bits (64), Expect = 1.2
Identities = 19/66 (28%), Positives = 35/66 (53%)
Frame = +3
Query: 276 NKSDSSQSKDVPKHFHSGNFVLLKSDVKWDGDTVISKLDELNLWKIDGKALLQKFIPMES 455
N +++ S D+ + F G F L K V ++ + + ++ L K D L+QKF +
Sbjct: 86 NLAETVISSDLQELF--GAFNLHKVSVNFNENGGAAGTGDITLKKYDADRLIQKFAGVAL 143
Query: 456 NGRVLH 473
+G+V+H
Sbjct: 144 DGKVMH 149
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +3
Query: 15 QGQGAEPEEFQDSGED----WTPDADSNEPASRTGRKRVSKAPVNNTKKKRK 158
+G G+EP++ DSG + T ++D +E + +K+ SK N +KK K
Sbjct: 492 EGSGSEPDDEYDSGSEKDASGTGESDPDE-ENIEPKKKESKEKKNKREKKEK 542
>L23645-9|AAK26134.1| 1226|Caenorhabditis elegans Hypothetical protein
F54F2.1 protein.
Length = 1226
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 33 PEEFQDSGEDWTPDADSNEPASRTGRKRVSKAPVNNTKKK 152
P++ + G+D+ + D E R G KRV + P KKK
Sbjct: 987 PDDQEYDGDDFEEEDD--EDFDRAGSKRVKRNPTPKKKKK 1024
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,392,512
Number of Sequences: 27780
Number of extensions: 218760
Number of successful extensions: 845
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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