Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_D11
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               24   0.86 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   4.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   4.6  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   4.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   4.6  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.6  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.6  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.6  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   4.6  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 63  WTPDADSNEPASRTGRKRVSKAPVNNT 143
           W  D+D  E ++R   K   K P N T
Sbjct: 39  WADDSDEEELSARPSFKTFDKGPKNYT 65


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 457 MEEFYTNVHVCILGWNVDNRDNYYP 531
           + E+Y +V   ILG   +    YYP
Sbjct: 192 LREYYPSVEWDILGVPAERHKKYYP 216


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 208 NRTHGFQHTSSRYSRERSC 226


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 219 NRTHGFQHTSSRYSRERSC 237


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 219 NRTHGFQHTSSRYSRERSC 237


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 208 NRTHGFQHTSSRYSRERSC 226


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 219 NRTHGFQHTSSRYSRERSC 237


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 208 NRTHGFQHTSSRYSRERSC 226


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 224 NRTHGFQHTSSRYSRERSC 242


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 219 NRTHGFQHTSSRYSRERSC 237


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -3

Query: 526 NNCHGCQHSTPEYTHVHLC 470
           N  HG QH++  Y+    C
Sbjct: 219 NRTHGFQHTSSRYSRERSC 237


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,790
Number of Sequences: 438
Number of extensions: 2515
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)