Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_D09
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    27   3.1  
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|...    27   3.1  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    26   4.1  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    25   7.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   7.1  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 252 LMLEESRMDKKLNRS-TQPQSRASAVDCKKNSDLTHKPWPRNNKKRE 389
           L + ES M   + R  TQP + A+ V  +K S+ + KP  +   K E
Sbjct: 469 LSVHESEMPPHVTRDYTQPAASATPVPKEKPSEKSEKPPKKKGSKLE 515


>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 260

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +3

Query: 327 DCKKNSDL--THKPWPRNNKKREGPGG 401
           D K+++DL  T    P+ NKKR+GP G
Sbjct: 194 DTKESTDLAGTEDSAPKANKKRKGPKG 220


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 255 STKTKRDTPRGGNDITYKADILESHVYDYKIKKIQLPVLYN 133
           S +  +D P   N++  + D+ ++   +YK+ K  +P LY+
Sbjct: 2   SEEVVQDAPLENNELNAEIDLQKTIQEEYKLWKQNVPFLYD 42


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 483 ESASSQMDGTPNSRLGDDDEPEIGSVFVPGSKKQNFNHLLNFMYPTRGNIERSE 644
           +SA+++ +G   S     D P +  V   GS  +N ++  +  YP  GN+   E
Sbjct: 23  QSATTEPEGQYRSAT---DNPSLYQVPTHGSLYRNLSNSASAYYPANGNMNSRE 73


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 443 WYRYIFPKWFIFRCATRTFTFLIVAGPRLVSQIGV-LFTVD 324
           W+  +F K F    A R    L V GPR++ Q+ + LF V+
Sbjct: 379 WFFSLFIKDFRLDYAFRILDCLFVNGPRVLFQVALALFKVN 419


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,142
Number of Sequences: 5004
Number of extensions: 59040
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)