Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_D07
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    95   8e-21
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   5.4  
SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB comp...    25   9.4  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    25   9.4  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 94.7 bits (225), Expect = 8e-21
 Identities = 51/120 (42%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
 Frame = +2

Query: 113 ELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 286
           EL  PGS  L G+ Q+YN  ++AH                  N LVPL++GAPD+A+PR+
Sbjct: 45  ELSAPGSQFLSGNGQLYNVAISAHGILMIFFFIIPALFGAFGNYLVPLMIGAPDVAYPRV 104

Query: 287 NNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHXGRSVXLAIFSLHLAGISS 466
           NN  F              + E G G G TVYPPLSS  +H G ++ LAI SL L GISS
Sbjct: 105 NNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTGISS 164



 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 13 IYSTNHKDIGTLYFIF 60
          I+STN KDI  LY +F
Sbjct: 12 IFSTNAKDIAILYLLF 27


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 304 TPTPLPYIINFKKNCRKWCRNRMNS 378
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


>SPBC13E7.10c |brf1|SPBC30D10.20|transcription factor TFIIIB complex
           subunit Brf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 134 MILDFLIQLELKVLKMFQLFLIKYRKIKYNVPI 36
           M++DF   L++ V K+   FL   R ++ N+P+
Sbjct: 152 MLIDFSDILQINVFKLGSTFLKLCRVLRPNLPL 184


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -1

Query: 125 DFLIQLELKVLKMFQL 78
           DFLIQL+ KV   FQL
Sbjct: 609 DFLIQLKSKVFNRFQL 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,579,860
Number of Sequences: 5004
Number of extensions: 25578
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)