Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_D05
(363 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal prot... 62 9e-11
U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeo... 29 1.00
AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protei... 29 1.00
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 27 4.0
U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr... 27 4.0
Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z82274-7|CAD21646.1| 331|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 7.0
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr... 26 7.0
U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical p... 26 9.3
AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical ... 26 9.3
AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical ... 26 9.3
>U00033-12|AAC48297.2| 88|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 21 protein.
Length = 88
Score = 62.5 bits (145), Expect = 9e-11
Identities = 29/52 (55%), Positives = 37/52 (71%), Gaps = 1/52 (1%)
Frame = +3
Query: 147 VQLVIADVDPATGRAAD-TSKMYVVCGAIRRMGESDDCIVRLTKKDGILAKN 299
VQ+ DVDP TGR S Y +CGAIRRMGESDD I+RL +KDG++ ++
Sbjct: 32 VQIDFVDVDPETGRMIPGKSTRYAICGAIRRMGESDDAILRLAQKDGLVPRD 83
Score = 54.0 bits (124), Expect = 3e-08
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +2
Query: 53 MQNDAGEFVDLYCPRKCSASNRLIHAKDHAS 145
MQNDAG+ V+LY PRKCS+SNR+I KDHAS
Sbjct: 1 MQNDAGQTVELYVPRKCSSSNRIIGPKDHAS 31
>U41017-5|AAC48216.2| 495|Caenorhabditis elegans C.elegans homeobox
protein 21 protein.
Length = 495
Score = 29.1 bits (62), Expect = 1.00
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 51 KCRTTPVNSLTCTARGNARPATASSTLRTMLQVQLVIA--DVDPATGRAADTSKM 209
K RTTP S T R ++ ASST + + ++ D GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249
>AJ427855-1|CAD20808.1| 495|Caenorhabditis elegans CEH-21 protein
protein.
Length = 495
Score = 29.1 bits (62), Expect = 1.00
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +3
Query: 51 KCRTTPVNSLTCTARGNARPATASSTLRTMLQVQLVIA--DVDPATGRAADTSKM 209
K RTTP S T R ++ ASST + + ++ D GRA +T K+
Sbjct: 195 KIRTTPEQSKAATKRQSSTTVRASSTCGSSVSSTSTVSSPDYTAKKGRATETPKL 249
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 27.1 bits (57), Expect = 4.0
Identities = 12/48 (25%), Positives = 22/48 (45%)
Frame = +3
Query: 60 TTPVNSLTCTARGNARPATASSTLRTMLQVQLVIADVDPATGRAADTS 203
TTP + T T T++ST +++ V + +P T + T+
Sbjct: 263 TTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPTT 310
>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical
protein C32E12.4 protein.
Length = 1553
Score = 27.1 bits (57), Expect = 4.0
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 57 RTTPVNSLTCTARGNARPATASSTLRTMLQVQLVIADVDPATGRAADTS 203
R T + + T+ GN+ +T+S T R + + I DP T RA S
Sbjct: 56 RPTSYRAGSITSGGNSSNSTSSYTPRNVRAGSVSIGAYDPPTSRADSVS 104
>Z92967-1|CAB07477.1| 220|Caenorhabditis elegans Hypothetical
protein T25E12.4b protein.
Length = 220
Score = 26.6 bits (56), Expect = 5.3
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +3
Query: 168 VDPATGRAADTSKMYVVCGAIRRMGESDDCIVRLTKKDG 284
V + G + +S + A R +G + DC+V +TK++G
Sbjct: 123 VADSEGAGSYSSFSSIASTASRMLGRAADCLVLMTKRNG 161
>Z82274-7|CAD21646.1| 331|Caenorhabditis elegans Hypothetical
protein JC8.13 protein.
Length = 331
Score = 26.6 bits (56), Expect = 5.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 9 ASCQFXCPSVDVHXKCRTTPVNSLTCTARGNARP 110
ASC+ CP +++ + R ++ L TA ++ P
Sbjct: 2 ASCESMCPVAEINFRSRNHLIDQLEATASTSSGP 35
>Z73103-3|CAA97423.1| 540|Caenorhabditis elegans Hypothetical
protein C08F8.4 protein.
Length = 540
Score = 26.6 bits (56), Expect = 5.3
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -1
Query: 138 WSLAWMRRLLAEHFLGQYKS 79
W++AW+RR++ E G Y++
Sbjct: 359 WTVAWLRRVVYERVEGPYRT 378
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
T01D3.7 protein.
Length = 2882
Score = 26.2 bits (55), Expect = 7.0
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 253 SSDSPILRIAPQTTYILDVSAARPVAGSTSAITSCT*SMVLS 128
++ P R+ P TT I D +G+TS ++ T S +S
Sbjct: 2472 TTTQPTSRVTPDTTRITDFYTRTTSSGTTSETSTSTSSQTVS 2513
>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 251 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 156
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
ZC116.3 protein.
Length = 3871
Score = 26.2 bits (55), Expect = 7.0
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -2
Query: 251 IRLSHPSDSPTDNIHFRCVSSTTCGGVYVSNH 156
+RL+ +DS T FR CG +Y NH
Sbjct: 3100 VRLNFTTDSQTTARGFRVNWEAECGAIYRLNH 3131
>U00032-10|AAA50637.1| 418|Caenorhabditis elegans Hypothetical
protein F37A4.9 protein.
Length = 418
Score = 25.8 bits (54), Expect = 9.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -3
Query: 178 AGSTSAITSCT*SMVLSVDEAVAGRAFPRAVQVNEFTGVVLHXXC 44
A STS S + L +DE+ A AF + EF+ ++ C
Sbjct: 196 ASSTSRSLSSPNTKCLKIDESSAHDAFTEFLSTGEFSDFIIVASC 240
>AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.8 protein.
Length = 383
Score = 25.8 bits (54), Expect = 9.3
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 78 LTCTARGNARPATASSTLRTMLQVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDD- 254
L R A+ + L + +++L++ D A + S ++ + +++D
Sbjct: 105 LPTNLRDFAQKCSDPHELSLLAKLELIVFD----ESTALNPSSAVLLSKTVATWAQNNDG 160
Query: 255 CIVRLTKKDGILAKNY*HLVHQTT 326
CIV KK G+L + Y L+ + T
Sbjct: 161 CIVGSRKKYGLLGQRYSELIDRVT 184
>AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.2 protein.
Length = 383
Score = 25.8 bits (54), Expect = 9.3
Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Frame = +3
Query: 78 LTCTARGNARPATASSTLRTMLQVQLVIADVDPATGRAADTSKMYVVCGAIRRMGESDD- 254
L R A+ + L + +++L++ D A + S ++ + +++D
Sbjct: 105 LPTNLRDFAQKCSDPHELSLLAKLELIVFD----ESTALNPSSAVLLSKTVATWAQNNDG 160
Query: 255 CIVRLTKKDGILAKNY*HLVHQTT 326
CIV KK G+L + Y L+ + T
Sbjct: 161 CIVGSRKKYGLLGQRYSELIDRVT 184
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,294,065
Number of Sequences: 27780
Number of extensions: 154480
Number of successful extensions: 424
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 503476126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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