Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_D05
         (363 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    25   0.28 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   3.4  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   5.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.9  

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 25.0 bits (52), Expect = 0.28
 Identities = 11/45 (24%), Positives = 19/45 (42%)
 Frame = +2

Query: 8   RILSIPVSQCGRTXXMQNDAGEFVDLYCPRKCSASNRLIHAKDHA 142
           ++L +PV   G++     D     D+YC +        +  K HA
Sbjct: 136 KVLLLPVRGAGKSNITMYDLKSHNDIYCEKYEKNGETYLRIKKHA 180


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 5   FRILSIPVSQCGRTXXMQNDAGEFVDLY 88
           FRIL+ PV+Q  R    +N    F  ++
Sbjct: 395 FRILNAPVNQLIRYTRCENPKTNFFSIF 422


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = +3

Query: 69   VNSLTCTARGNARPATASSTLRTMLQVQLVIADVDPATGRAADTSKMYVVCGAI 230
            +N+ T    G+    T  STLR   + + +  D  PAT      +     CG +
Sbjct: 1225 INTYTLDGVGSVEK-TGVSTLRGQERQRSLFKDSSPATALMLQHAPPAYSCGTV 1277


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 183  GRAADTSKMYVVCGAIRRMGESD 251
            GR  +++K YVV   +   GES+
Sbjct: 1182 GRGIESAKSYVVDVRVHVPGESE 1204


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 5.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -1

Query: 255 NHQTLPSFG*PHRQH 211
           NH   P+ G PH  H
Sbjct: 340 NHTMGPTMGPPHHHH 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,076
Number of Sequences: 438
Number of extensions: 1999
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8556345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)