Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_D03
(519 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 99 3e-22
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 85 6e-18
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 45 6e-06
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch... 27 1.7
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 27 2.2
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 5.1
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 25 5.1
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 25 6.8
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 99.1 bits (236), Expect = 3e-22
Identities = 43/61 (70%), Positives = 54/61 (88%)
Frame = +1
Query: 175 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 354
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 355 Y 357
Y
Sbjct: 67 Y 67
Score = 29.1 bits (62), Expect = 0.42
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 416 LYKGFIHLGAGLAVXFSG 469
LY GFI LGAGL+V +G
Sbjct: 85 LYSGFIQLGAGLSVGLAG 102
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +3
Query: 474 AAGFAIXIVGDAG 512
AAGFAI IVGDAG
Sbjct: 104 AAGFAIGIVGDAG 116
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 85.0 bits (201), Expect = 6e-18
Identities = 36/61 (59%), Positives = 47/61 (77%)
Frame = +1
Query: 175 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 354
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 355 Y 357
Y
Sbjct: 67 Y 67
Score = 35.9 bits (79), Expect = 0.004
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +2
Query: 380 IAGALQEHXXYPLYKGFIHLGAGLAVXFSG 469
IAG + Y L+ GFIHL AGLAV +G
Sbjct: 75 IAGDMSPDNDYSLFSGFIHLSAGLAVGLTG 104
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 45.2 bits (102), Expect = 6e-06
Identities = 19/55 (34%), Positives = 33/55 (60%)
Frame = +1
Query: 193 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 357
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIY 99
>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 791
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 9 FNILRHMXHSVESAKLGPYLSV 74
F L+H H +SAK+G Y+ V
Sbjct: 558 FGTLQHAMHMTQSAKIGHYMKV 579
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 133 TGPKNCDDYLHTLTPRNYFCTDK 65
TG KNCDD+L +P + D+
Sbjct: 402 TGNKNCDDHLRDKSPERRYRYDR 424
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 5.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -3
Query: 133 TGPKNCDDYLHTL 95
TGP N DDY+H +
Sbjct: 369 TGPSNTDDYIHRI 381
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 25.4 bits (53), Expect = 5.1
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Frame = +1
Query: 178 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR----PELI--MKSIIPVVMA 339
+YGPF+ A+ FS Y +G G + S+ + +I +II V++
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSIKKLISAASIIYGYTTIIAVLLW 146
Query: 340 GIIAIYRSGRGGPDCWC 390
GI+ + DC C
Sbjct: 147 GILVWNKCNPKLLDCLC 163
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 25.0 bits (52), Expect = 6.8
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Frame = +1
Query: 154 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 318
+K+A ++P I F+G ++G + F+ + + ++ G S LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483
Query: 319 IIPVVMAGIIAIY 357
+ P+V++ IIA +
Sbjct: 1484 VAPLVLSAIIAFF 1496
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,091
Number of Sequences: 5004
Number of extensions: 45676
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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