Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_D01
         (522 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...   134   1e-32
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    25   5.2  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    25   6.8  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    25   9.0  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score =  134 bits (323), Expect = 1e-32
 Identities = 67/137 (48%), Positives = 86/137 (62%), Gaps = 2/137 (1%)
 Frame = +3

Query: 117 GSLLALCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFFIC 296
           GSLLA  L+IQI+ G+ L  +Y  N+++AF  V  I R+VNYG ++R  HANGASFFFI 
Sbjct: 33  GSLLACVLVIQIVIGILLACFYIPNMDLAFLSVERIVRDVNYGFLLRAFHANGASFFFIF 92

Query: 297 IYLHIGRGIYYESFNL--KYVXXXXXXXXXXXXXXXXXXYVLP*GQISFWGATVITNLLS 470
           +YLHIGRG+YY S+                         Y LP  Q+SFWGATVITNLLS
Sbjct: 93  LYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVITNLLS 152

Query: 471 AIPYLGTILXN*I*GGF 521
           A+P++G  L + + GGF
Sbjct: 153 AVPFIGDDLVHLLWGGF 169


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 13/52 (25%), Positives = 23/52 (44%)
 Frame = +2

Query: 359 NWNYNFIYTNSNCFHXLCLTLRSNIFLGGNRNYXSIICNPLFRNYIXKLNLR 514
           N +Y F + N      + L+  S + L  +     I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 359 NWNYNFIYTNSNCFHXLCLTLRSNIFLGGN 448
           NWN      +SN  + LC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/34 (29%), Positives = 15/34 (44%)
 Frame = +2

Query: 386 NSNCFHXLCLTLRSNIFLGGNRNYXSIICNPLFR 487
           N  C+H +C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,855,089
Number of Sequences: 5004
Number of extensions: 34379
Number of successful extensions: 64
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)