Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_C19
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 30 0.25
SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces po... 27 2.3
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch... 27 3.1
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy... 26 4.1
SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein Spo14|Sch... 26 4.1
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.4
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 25 7.1
SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family protein|Schizosaccha... 25 7.1
SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter N... 25 7.1
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 25 7.1
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 25 9.4
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 25 9.4
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 30.3 bits (65), Expect = 0.25
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 479 STMLXWSLTKFPKTYTIXE-AMIVTQGFDFIHHCXYWKDH 595
ST L SL K P I A+I+ QG D + H W DH
Sbjct: 2456 STGLLESLCKVPVVNGISAPALILQQGIDLLSHLATWADH 2495
>SPAPB17E12.08 |||N-glycosylation protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 27.1 bits (57), Expect = 2.3
Identities = 22/101 (21%), Positives = 41/101 (40%)
Frame = +2
Query: 227 LLISYNFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSAL 406
L +S +F+ Y L A++A+ F + V S ++ P +SS
Sbjct: 67 LSLSVSFITHGDNAYLLPAWIAISCFQTAAYIVQDWITSPIIRTLPFRSSSSSSSNYRHN 126
Query: 407 MNFIFNTQGLTTSLSFSLTAVYLYSTMLXWSLTKFPKTYTI 529
++F+ T + A + ML W L K+P ++ +
Sbjct: 127 LDFLEITVFAVVPVGI---ASFFTMVMLIWQLYKYPDSFLV 164
>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 546
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +2
Query: 209 CALLPALLISYNFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLV 352
C LLP + + + ++ +V +A F +S+L V F+S + ++
Sbjct: 423 CFLLPISMFWFAWTCYPHHIHWIVPIIASAFFGFSLLIVFFVSYNYII 470
>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1010
Score = 26.2 bits (55), Expect = 4.1
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -2
Query: 329 IPQTVCCSRINQQLRKLLVYKVATLCTKNCMRL-IMRAVKHNTITRCLR*ASF-LYLHLL 156
IP+ C I +L +L Y + LC C L + K++ + L F +YL+L
Sbjct: 806 IPKAFCAVEIVDRLAAMLNYNLQALCGPKCSNLKVEDPTKYHFNAKTLLSIIFDVYLNLC 865
Query: 155 D---FVEIV 138
+ FVE V
Sbjct: 866 NEPAFVEAV 874
>SPBC3H7.01 |spo14|stl1, SPBP16F5.01c|WD repeat protein
Spo14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = +1
Query: 70 NSKVLHFYNSFKRYTSLCMSVDYTISTKSKRWRYRNEAYLKQRVMVLCF 216
N ++ YN K V + S+K++ WR+ LK V CF
Sbjct: 215 NQSIVAAYNYIKDSKRFASLVRFDYSSKNQLWRFGMIRDLKNAKGVTCF 263
>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 5.4
Identities = 21/90 (23%), Positives = 38/90 (42%)
Frame = +2
Query: 230 LISYNFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALM 409
L+S LY +LV + F +LF+ F+ SC+V E + + + L+
Sbjct: 361 LVSERMLYLSLMYKSLVDLKTIDSFSLKLLFLKFMICSCMVKGESNF---FLDNRI-FLL 416
Query: 410 NFIFNTQGLTTSLSFSLTAVYLYSTMLXWS 499
I N G+ ++ L ++ + WS
Sbjct: 417 ERIMNRYGIPMTIDTFLLMQFILAKSNRWS 446
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +3
Query: 189 QATGYGVVLYCPHY*SH 239
+ATGYGVV Y H H
Sbjct: 194 EATGYGVVYYVKHMIEH 210
>SPAC1639.01c ||SPAC806.09c|GNS1/SUR4 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.4 bits (53), Expect = 7.1
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = -3
Query: 565 KVKPLCYNHGFSYSVC 518
+V P Y HGF +S+C
Sbjct: 89 QVAPAIYKHGFFFSIC 104
>SPCC1884.02 |nic1|SPCC757.01|NiCoT heavy metal ion transporter
Nic1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 405
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 259 VATLYTSSLRSCWFILLQHTVCGIHFCIMSGTQRAYLWRMYS 384
+ATL S W ILL V + C++ T A ++ YS
Sbjct: 227 IATLQALKGTSIWAILLFPIVFLVGMCLVDTTDGALMYYAYS 268
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +2
Query: 335 SVSCLVLREPIYGGCIASSLVSALMNFIFNTQGLTTSLSFSLTAVYLYSTML 490
S+S ++ +GG I + L + + + + + +SFS+ V +Y TML
Sbjct: 17 SLSASQIQMLAFGGIIGTGLFLGIGSSLAESGPASLLISFSVLGVSVYCTML 68
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/12 (66%), Positives = 8/12 (66%)
Frame = -3
Query: 547 YNHGFSYSVCLW 512
Y HGFS S C W
Sbjct: 293 YKHGFSVSCCCW 304
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.0 bits (52), Expect = 9.4
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -2
Query: 353 VPDMIQK*IPQTVCCSRINQQLRKLLVYKVATLCTKNCMRLIMRAVKHN 207
+ ++ +K IP+ + NQ R K + LC + R R +K+N
Sbjct: 627 IKEIARKEIPRVYKIIQQNQYNRSTNARKTSQLCGREARRWQFRTIKNN 675
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,651,047
Number of Sequences: 5004
Number of extensions: 54953
Number of successful extensions: 129
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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