Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_C19
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0397 - 17230152-17231453                                         31   0.79 
01_01_0663 - 5059881-5060119,5060682-5060898,5061008-5061838,506...    29   2.4  
01_01_1139 - 9024609-9024708,9024832-9024910,9025083-9025252,902...    29   3.2  
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801...    28   5.6  
04_01_0505 + 6599181-6599249,6599537-6599632,6599931-6599962,660...    28   7.4  
01_01_0346 + 2756652-2756830,2759178-2759405,2759818-2759905,275...    28   7.4  
02_02_0533 - 11271859-11272039,11273302-11273336                       27   9.7  

>11_04_0397 - 17230152-17231453
          Length = 433

 Score = 31.1 bits (67), Expect = 0.79
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +2

Query: 65  RVIRKFYTFIIVLNGTLHCACRLIIQFQRNLRDGGIGTRPISSNGLWCCAL-LPALLISY 241
           R++R F T I++  G LH AC L   +       G+GT    +  + C A+   +LL+S+
Sbjct: 31  RLVRFFGTTIVLSLGLLHAACSL--HWAHRPLPRGVGTAAFGATAVLCLAVGAVSLLLSW 88

Query: 242 N 244
           +
Sbjct: 89  S 89


>01_01_0663 -
           5059881-5060119,5060682-5060898,5061008-5061838,
           5063560-5064120
          Length = 615

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 281 LLVYKVATLCTKNCMRLIMRAV 216
           LL+  VA LC K+CM+L+ R +
Sbjct: 203 LLILSVANLCNKSCMKLLERCL 224


>01_01_1139 -
           9024609-9024708,9024832-9024910,9025083-9025252,
           9025339-9025451,9025518-9025586,9025867-9025944,
           9026022-9026084,9026590-9026670,9027166-9027222,
           9027352-9027705
          Length = 387

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 245 FLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIFN 424
           FLYK+  +  +V Y AV LF Y +  V +  +  L LR  +  G   S++    MN +  
Sbjct: 186 FLYKLLKVIRIVPYSAVQLFSYEVYKVTY-PLDVLRLRLAVQSG--HSTMSQVAMNML-R 241

Query: 425 TQGLTT 442
            +GL +
Sbjct: 242 DEGLAS 247


>03_02_0386 +
           8009884-8010133,8010274-8010338,8010545-8010658,
           8010736-8010895,8010975-8011093,8011209-8011635,
           8011834-8012057,8012863-8012973,8013056-8013188,
           8013259-8013365,8013430-8013444,8013482-8013571,
           8013855-8013917,8013973-8014053,8014136-8014208,
           8014312-8014367,8014460-8014554,8014649-8014683,
           8015449-8015525
          Length = 764

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -3

Query: 565 KVKPLCYNHGFSYSVCLWEFGERP 494
           KVK +C N GF Y  CL E    P
Sbjct: 198 KVKDICKNLGFLYQCCLPEHARTP 221


>04_01_0505 +
           6599181-6599249,6599537-6599632,6599931-6599962,
           6601191-6601428,6601852-6601905,6601923-6602130,
           6602353-6602590,6602788-6602962,6603074-6603442
          Length = 492

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 456 EKDNDVVKPCVLNIKFIRADTR 391
           E+DND V P  LN+  +RA TR
Sbjct: 106 EEDNDYVDPPTLNLTVLRAATR 127


>01_01_0346 +
           2756652-2756830,2759178-2759405,2759818-2759905,
           2759998-2760094,2760353-2760393
          Length = 210

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
 Frame = +2

Query: 74  RKFYTFIIVLNGTL--HCACRLIIQFQRNLRDGGIGTRPISSNGLWCCA--LLPALLISY 241
           R F T + ++  T+   C  R+  Q QR   D  I     +   LW  A   +PAL++  
Sbjct: 71  RGFDTVVTLVAWTIWKECNGRVFNQQQRTWVD--IVKGMAAETALWRQANSAIPALILRR 128

Query: 242 NFLYKVSPLYTLVAYVAVGLFCYSILFVVFISVSCLVLREPIYGGCIASSLVSALMNFIF 421
           +F  +  P  T +    VG+ C  +L  ++I++  + ++   Y     S   S   N+ +
Sbjct: 129 DFGSQNRPYSTFIVCFPVGMVCEVVL--IYIALPFMEMKAQQYQASEKSDKWSFSFNYFY 186


>02_02_0533 - 11271859-11272039,11273302-11273336
          Length = 71

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 331 HFCIMSGTQRAYLWRMYSI*SCIC 402
           HFCI  G     +WR+  I SC C
Sbjct: 18  HFCIGRGGIGMNIWRLLKIISCSC 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,004,433
Number of Sequences: 37544
Number of extensions: 307961
Number of successful extensions: 699
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)