Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_C06
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 31 0.11
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 31 0.19
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.25
SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|... 28 1.0
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 1.8
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 27 2.3
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.3
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 2.3
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom... 27 3.1
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 27 3.1
SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase comp... 26 4.0
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 26 5.3
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 26 5.3
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 26 5.3
SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces pomb... 25 7.1
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2... 25 7.1
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 25 9.3
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/30 (56%), Positives = 21/30 (70%)
Frame = +1
Query: 127 TVSDDLTRENSASEISKCIKDLSANNRNLS 216
++S LTRE+S E K IKDLS NR+LS
Sbjct: 243 SISAVLTRESSKYEKGKVIKDLSYLNRDLS 272
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 30.7 bits (66), Expect = 0.19
Identities = 14/63 (22%), Positives = 32/63 (50%)
Frame = +3
Query: 345 IINRKITMSAKSTTPRKRNQRITARLSQENINKCNKSVERQRARTFVTWYKQMIDNERQN 524
++ ++ + + R R +R+ ++++ K N+ +RA TF+ Y+Q ER+
Sbjct: 12 MLEPEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQ---RERER 68
Query: 525 LAL 533
+ L
Sbjct: 69 IRL 71
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 30.3 bits (65), Expect = 0.25
Identities = 22/93 (23%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +1
Query: 91 CFTAVEDCKMNSTVSDDLTRENSASEISKCIKDLSANNRNLSLLHK-ELLEINLSV--KT 261
CF+ +ED K +SD++ +I + +L ++L+L H+ L E +L V +
Sbjct: 248 CFSFLEDAKTKEGLSDEMKSSPKLQQIYHRLDELLNKLKHLTLTHRWTLRETDLYVYRAS 307
Query: 262 YVQESKKRLQGLRLDLAHEARSSHQVVELLTEK 360
+ R+ G LD A + +++ L +
Sbjct: 308 LAEIDSMRIDGQFLDEQGNAPAGQRILLYLLRR 340
>SPAC23A1.16c |||DUF408 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 28.3 bits (60), Expect = 1.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +3
Query: 420 LSQENINKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTI 578
+++++I K K+ + + + +TW K +ID R L D LEW + +
Sbjct: 1 MNKKSILKKPKNAQSTQEKQLITWSKSLIDEARSRLQY---DFFALEWIEKLV 50
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.5 bits (58), Expect = 1.8
Identities = 24/114 (21%), Positives = 49/114 (42%), Gaps = 4/114 (3%)
Frame = +1
Query: 154 NSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQGLRLDLAHEARSSH 333
N SEI+ ++ + L + L + L + + ++ +K L + + S
Sbjct: 430 NRVSEINSSLEKQLTTQKELRSRFEILFPVKLQREDFTKDVEK--SDLWIKSLRQEYESK 487
Query: 334 QVVELLTEK*QCQQSQQHRANEIKG*LQDYHR----RTSTNVTNQ*KDSELGLL 483
++ELL + S ++R +EI + YH+ RT V + K ++ +L
Sbjct: 488 NLLELLDKHQTALSSVENRLDEISEIVDSYHKYSGVRTKLQVFEENKTNKSAIL 541
Score = 25.8 bits (54), Expect = 5.3
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +1
Query: 142 LTREN-SASEISKCIKDLSANNRNLSLLHKELLEINL---SVKTYVQESKKRLQGLRLDL 309
LT+ N +E+ + KD++ ++ + L K+LLE++ S ++ E + + L D+
Sbjct: 865 LTKLNFQVNELEQLEKDINKSSEDCDLQKKKLLEVSSKQGSQAPFLNELESEYEKLEADI 924
Query: 310 AHEARSS 330
A+ S
Sbjct: 925 QEMAQKS 931
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 543 DDAFLEWFGRTIKTRKKVSAFLKHDMH-CSKH 635
DDAF+E+ T+ RK FL H++ SKH
Sbjct: 691 DDAFVEYKDATVANRKDFIEFLFHNITVSSKH 722
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = +1
Query: 115 KMNSTVSDDLTRENSASEISKCIKDLSANNRNLSLL 222
K+NS SD L +N + ISK + +A N+ LSLL
Sbjct: 1395 KINSLCSDCL--KNPCATISKAVTQHNAYNKKLSLL 1428
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = +1
Query: 118 MNSTVSDDLTRENSASEISKCIKDLSANNRNLSLLHKELLEINLSVK 258
+ S VSD++ +S E S K + N++NL ++ +E NLS++
Sbjct: 35 IKSRVSDEIDEHDSIPEQSNTEKSIEINDKNLEA--EKDIESNLSLR 79
>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +3
Query: 345 IINRKITMSAKSTTPRKRNQRITARLSQENINKCNKSVERQRA 473
I+NRK T+ K + P+K+N+ ++ + +EN + S + A
Sbjct: 294 ILNRKPTLRKKKSIPKKQNES-SSTIQKENTVQQEASSSEEEA 335
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.6 bits (56), Expect = 3.1
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = +3
Query: 435 INKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLEWFGRTIKTRKKVSAFLKH 614
I K +++ R + T TW Q + Q ++ A+ A W RT+ T + + A
Sbjct: 277 IRKAHENSGRDCSITSATWLPQ---STSQVISSCSANSALKLWDLRTVHTVRPLPAATTP 333
Query: 615 DMHCSKHDF 641
++ SK DF
Sbjct: 334 ELTTSKRDF 342
>SPBP23A10.15c |qcr1|mas1|mitochondrial processing peptidase complex
beta subunit Qcr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 457
Score = 26.2 bits (55), Expect = 4.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 245 LISKSSLCSNERFLLLAERSFMHLEISEAEFS 150
+IS + S+E + LAE+ F HLE S + S
Sbjct: 205 IISSAGSISHEELVKLAEKYFGHLEPSAEQLS 236
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/69 (21%), Positives = 33/69 (47%)
Frame = +3
Query: 327 LPSSGRIINRKITMSAKSTTPRKRNQRITARLSQENINKCNKSVERQRARTFVTWYKQMI 506
+PS +I + + K T + R QR+ A ++ + + + +RA ++ Y++
Sbjct: 8 VPSKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKA- 66
Query: 507 DNERQNLAL 533
ER+ + L
Sbjct: 67 --EREQIEL 73
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +1
Query: 106 EDCK-MNSTVSDDLTRENSASEISKCI 183
E C MNST +D++T ENS SEI + I
Sbjct: 961 EQCSCMNSTENDNITTENS-SEIVQVI 986
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.8 bits (54), Expect = 5.3
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 429 ENINKCNKSVERQRARTFVTWYKQMIDNERQNLALYLADDAFLE 560
E IN C E++R R F + +KQ Q L + A E
Sbjct: 505 ETINYCLNMTEKERERRFSSLWKQATSQSSQQWIYKLINRAAYE 548
>SPAC186.08c |||L-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 330
Score = 25.4 bits (53), Expect = 7.1
Identities = 21/82 (25%), Positives = 35/82 (42%)
Frame = +1
Query: 133 SDDLTRENSASEISKCIKDLSANNRNLSLLHKELLEINLSVKTYVQESKKRLQGLRLDLA 312
S+D R +S I I + A N + LL + + +KK+ +G +DL
Sbjct: 9 SNDSVRSSSFKSIKIVI--VGAGNVGSTTAFTLLLSGLAAEIVIIDLNKKKAEGEAMDLN 66
Query: 313 HEARSSHQVVELLTEK*QCQQS 378
H A SH+ L + C+ +
Sbjct: 67 HAAPLSHETRVYLGDYKDCKDA 88
>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 519
Score = 25.4 bits (53), Expect = 7.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 112 CKMNSTVSDDLTRENSASEIS-KCIKDLSANNRNLSLLHKELLE 240
CK+ + ASEI+ C+ D + L+++HKELLE
Sbjct: 453 CKLAEAQINIEMISQGASEINISCVIDEKMAVKALNVIHKELLE 496
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 25.0 bits (52), Expect = 9.3
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -2
Query: 272 SCT*VLTERLISKSSLCSNERFLLLAE-RSFMHLEISEAEFSRVKSSDTVE 123
SC+ + + SSL + R+++ E RSF+++ S E S SSD E
Sbjct: 257 SCSSKSSSDVSDLSSLPQSNRYVISEEDRSFLNIWDSGGELSDASSSDLDE 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,458,776
Number of Sequences: 5004
Number of extensions: 47673
Number of successful extensions: 131
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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