Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_B22
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...   101   7e-23
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    28   0.58 
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    25   5.4  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    25   7.1  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   9.4  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    24   9.4  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    24   9.4  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score =  101 bits (241), Expect = 7e-23
 Identities = 47/91 (51%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  NATKYTRYHST--KSPRKGTLPRXRRRYDRKQQGYGGQSKPIFXXXXXXXXXIVLRLECA 263
           N  K+T +  T  K      L + +RRYDRKQ G+GGQ+KP+F         +VLRLEC 
Sbjct: 16  NCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHKKAKVTKKVVLRLECV 75

Query: 264 DCKVRSQVALKRCKHFELGGDKKRKGQMIQF 356
            CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 76  SCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106



 Score = 27.9 bits (59), Expect = 0.76
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 44  MVNVPKQRRTY--XXXXXXXXXXXXSQYKKSKERHAAQG 154
           MVN+PK R+TY              +QYKK  +   AQG
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQG 39


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 153 PWAACLSLDFLYCDTLCTLWHL 88
           P A  + L +LY DTL + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
 Frame = +3

Query: 51  TYQNSAGRTAKNVNATKYTRYHSTKSPRKGTLPRXRRR--YDRKQQGYGGQSKPIF 212
           TY+N +   A    +  Y   H      K   P+   R  +DR Q GY G + P +
Sbjct: 294 TYENESAVEA--TMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHGYHGNANPYY 347


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -1

Query: 135 SLDFLYCDTLCTLWHLHFLQYVLRCFGTFTIFE 37
           S+ F +   L TL+H   + + + C G F +F+
Sbjct: 67  SISF-FSGLLLTLFHFPIIGFFVECLGFFNLFK 98


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +3

Query: 99  KYTRYHSTKSPRKGTLPRXRRRYDRKQQGYGGQSK 203
           KY  YH  K+P KGT    R     K   Y   SK
Sbjct: 565 KYPYYH-VKTPEKGTTVVSRTVTSPKSGAYASPSK 598


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 138 GTLPRXRRRYDRKQQGYGGQS 200
           GT+P    ++ + QQGY  QS
Sbjct: 762 GTMPYNNNKFGQPQQGYMSQS 782


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 190 VVSPNPSSKRRQKPLRKLCSVLS 258
           V SPNP S +R+K  R+  S+ S
Sbjct: 276 VSSPNPPSAKREKKKRRKSSMSS 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,835
Number of Sequences: 5004
Number of extensions: 26506
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)