Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_B20
(630 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.09c |||GTPase activating protein |Schizosaccharomyces po... 29 0.55
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 28 0.97
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 28 1.3
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 27 1.7
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 27 1.7
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 27 3.0
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 26 3.9
SPBC27B12.12c |||CorA family magnesium ion transporter |Schizosa... 26 3.9
SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomy... 26 5.2
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom... 25 6.8
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy... 25 6.8
SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1 |Schizosac... 25 9.0
>SPAC824.09c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 29.1 bits (62), Expect = 0.55
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 17 THGSEFXATAWRPPSMTSNILSA 85
T GS F A W+ P TSN+ SA
Sbjct: 266 TTGSSFVADKWKMPMFTSNVTSA 288
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 28.3 bits (60), Expect = 0.97
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 337 EALDKLHHGEAVTPLGRRVYADLDRPLERYP 429
EA + L+H E VT ++ + DRP+ YP
Sbjct: 86 EATEALYHAEQVTEERKKHFEHHDRPIGSYP 116
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 541 QRNRVXASKCXRRKLERISKLEXKVK 618
+RNR A KC +RK + +S L+ KV+
Sbjct: 480 ERNRQAALKCRQRKKQWLSNLQAKVE 505
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 523 KLERKRQRNRVXASKCXRRKLERISKLEXKVK 618
+L++K+QR+ ASK +LER +L K++
Sbjct: 173 RLKQKKQRSEFRASKREMERLERDQELRNKIE 204
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +1
Query: 394 YADLDRPLERYPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRV 555
+ D P Y TP K VP +S+PPLS Q + +R +R+
Sbjct: 171 FEDASSPQSSYHTP-TKRRKNAVPRKSSSPPLSSTKHAPQSTERRPVRRSESRL 223
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 26.6 bits (56), Expect = 3.0
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +1
Query: 394 YADLDRPLERYPTP-----IVKDEPQTVPSAASTPPLSPIDMDTQEKIKL 528
Y D R ++R TP I K+E TVP PP D +T K+ +
Sbjct: 252 YKDSKREMKRSNTPWSNASIKKNEVPTVPIRYKPPPWRDSDFETVPKLPI 301
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 523 KLERKRQRNRVXASKCXRRKLERISKLE 606
K R +RNR+ ASK ++K E I +LE
Sbjct: 12 KRRRILERNRIAASKFRQKKKEWIKELE 39
>SPBC27B12.12c |||CorA family magnesium ion transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 3.9
Identities = 12/52 (23%), Positives = 24/52 (46%)
Frame = +1
Query: 430 TPIVKDEPQTVPSAASTPPLSPIDMDTQEKIKLERKRQRNRVXASKCXRRKL 585
+P+ PSA + P S I++ E + + K+++ K R+K+
Sbjct: 72 SPVSSQTTYATPSAYAVPQESEIELHESEMVPQKPKKKKRSRRNRKASRKKI 123
>SPBC2F12.09c |atf21||transcription factor Atf21|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 355
Score = 25.8 bits (54), Expect = 5.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 520 IKLERKRQRNRVXASKCXRRKLERISKLEXKVKI 621
+K R +RNR+ ASKC ++K LE I
Sbjct: 268 MKRRRFLERNRIAASKCRQKKKLWTQNLEKTAHI 301
>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 781
Score = 25.4 bits (53), Expect = 6.8
Identities = 18/66 (27%), Positives = 29/66 (43%)
Frame = -1
Query: 237 VLNDQFFQLRRSELQHL*IWRGEXRVQRFVNVSHPAQHXKVRGLLRFSXRAAERILLVIE 58
V+N+ + QL LQ++ R + + HP RG L+ E +L +I
Sbjct: 286 VMNNNY-QLSEEALQYITRSRVNLWIAHYWKDFHPRWPFLHRGTLKVDEAPVELLLAMIT 344
Query: 57 GGLHAV 40
G+H V
Sbjct: 345 MGMHFV 350
>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 386
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 289 AVAPTEEQEMYARPFVEALDKLHHGEAVTPLGR 387
A +E E YA+PFVE +K + A G+
Sbjct: 190 ASGKADESEFYAQPFVEEGEKDYDEAAAAKAGK 222
>SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 120
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 467 LGTVWGSSFTMGVGYRSSGLSKSAYTLRPSG-VTASPWCSLSSASTKGRAYISCSSV 300
+G + GS+ +G+G+ G++ Y P G + L+SA+T G ++S SV
Sbjct: 14 MGAIMGSAAGLGIGFLFGGVAVLRYGPGPRGFLRTLGQYMLTSAATFG-FFMSIGSV 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,448,577
Number of Sequences: 5004
Number of extensions: 46522
Number of successful extensions: 152
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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