Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_B20
(630 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 3.2
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 22 4.3
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 7.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 7.5
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 21 7.5
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 21 7.5
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 21 9.9
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 21 9.9
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 21 9.9
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 3.2
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +2
Query: 26 SEFXATAWRPPSMTSNILS 82
SE +WRPPS + +++
Sbjct: 1193 SESILVSWRPPSQPNGVIT 1211
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 22.2 bits (45), Expect = 4.3
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = -3
Query: 67 RHRRWSPCCGXEFRTMCLHRTL 2
RH+++ PCC + + + TL
Sbjct: 210 RHKKYYPCCDEPYPDIFFNITL 231
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 424 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 525
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 424 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 525
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 424 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 525
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 424 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 525
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 424 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 525
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 424 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 525
+ TPI P TV +++ PLS + + +K
Sbjct: 370 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 403
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 424 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 525
+ TPI P TV +++ PLS + + +K
Sbjct: 438 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 471
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 7.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 424 YPTPIVKDEPQTVPSAASTPPLSPIDMDTQEKIK 525
+ TPI P TV +++ PLS + + +K
Sbjct: 438 FGTPISTGRPATVEDTSASLPLSGMQEELHTILK 471
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 21.4 bits (43), Expect = 7.5
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -3
Query: 589 VPAYVVYIW 563
+P Y++YIW
Sbjct: 543 IPGYMIYIW 551
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 21.4 bits (43), Expect = 7.5
Identities = 5/9 (55%), Positives = 8/9 (88%)
Frame = -3
Query: 589 VPAYVVYIW 563
+P Y++YIW
Sbjct: 596 IPGYMIYIW 604
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 21.0 bits (42), Expect = 9.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 432 SGVSL*RPVQIGIYSTSERRHCLAVVQ 352
S VSL P+ G Y T R+ LA Q
Sbjct: 282 SYVSLDHPIPTGYYPTMRFRNGLAFPQ 308
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 21.0 bits (42), Expect = 9.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = -1
Query: 432 SGVSL*RPVQIGIYSTSERRHCLAVVQ 352
S VSL P+ G Y T R+ LA Q
Sbjct: 282 SYVSLDHPIPTGYYPTMRFRNGLAFPQ 308
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 21.0 bits (42), Expect = 9.9
Identities = 5/19 (26%), Positives = 11/19 (57%)
Frame = +2
Query: 503 WTLKKRLNWRERDRGIGXP 559
W +R+ W++ ++ G P
Sbjct: 317 WFQNRRMKWKKENKSKGTP 335
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,184
Number of Sequences: 438
Number of extensions: 3700
Number of successful extensions: 20
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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