Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_B18
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal pro...   130   1e-30
AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal...   108   4e-24
AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal pro...   108   4e-24
AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical pr...    28   5.0  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian el...    27   8.7  

>AC024200-4|AAF36008.1|  216|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform a protein.
          Length = 216

 Score =  130 bits (313), Expect = 1e-30
 Identities = 64/123 (52%), Positives = 78/123 (63%)
 Frame = +1

Query: 58  SKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYIPRPK 237
           SKVSR++L E +  VL+ S +K R F ET+ELQIGLKNYDPQKDKRFSG+++LK+IPRP 
Sbjct: 2   SKVSRESLNEAIAEVLKGSSEKPRKFRETIELQIGLKNYDPQKDKRFSGSIRLKHIPRPN 61

Query: 238 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 417
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 62  MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 121

Query: 418 FVG 426
            +G
Sbjct: 122 ILG 124



 Score =  108 bits (259), Expect = 4e-24
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +2

Query: 407 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 586
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 118 QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 177

Query: 587 LAQNVHLSINFL 622
           L  N+ LSINFL
Sbjct: 178 LVSNISLSINFL 189


>AJ270980-1|CAB65902.1|  186|Caenorhabditis elegans 60s ribosomal
           protein L10A protein.
          Length = 186

 Score =  108 bits (259), Expect = 4e-24
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +2

Query: 407 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 586
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 88  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 147

Query: 587 LAQNVHLSINFL 622
           L  N+ LSINFL
Sbjct: 148 LVSNISLSINFL 159



 Score = 89.4 bits (212), Expect = 2e-18
 Identities = 43/87 (49%), Positives = 51/87 (58%)
 Frame = +1

Query: 166 KNYDPQKDKRFSGTVKLKYIPRPKMQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXX 345
           KNYDPQKDKRFSG+++LK+IPRP M+VCV GDQ H DEA   ++P M             
Sbjct: 8   KNYDPQKDKRFSGSIRLKHIPRPNMKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKK 67

Query: 346 XXXXXXXXXXXXXXSESLIKQIPRFVG 426
                         SESLIKQIPR +G
Sbjct: 68  LIKKLAKSYDAFIASESLIKQIPRILG 94


>AC024200-5|AAK66025.1|  155|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 1, isoform b protein.
          Length = 155

 Score =  108 bits (259), Expect = 4e-24
 Identities = 47/72 (65%), Positives = 59/72 (81%)
 Frame = +2

Query: 407 RFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIKFQMKKVLCLSVAVGHVDMTPDE 586
           + P +LGPGLNKAGKFP +++H ES+  K DE++ T+KFQMKKVLCLSVAVGHV +T +E
Sbjct: 57  QIPRILGPGLNKAGKFPSVVTHGESLQSKSDEIRATVKFQMKKVLCLSVAVGHVGLTQEE 116

Query: 587 LAQNVHLSINFL 622
           L  N+ LSINFL
Sbjct: 117 LVSNISLSINFL 128



 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 24/63 (38%), Positives = 28/63 (44%)
 Frame = +1

Query: 238 MQVCVLGDQQHCDEAKTLNVPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXSESLIKQIPR 417
           M+VCV GDQ H DEA   ++P M                           SESLIKQIPR
Sbjct: 1   MKVCVFGDQHHLDEAAAGDIPSMSADDLKKLNKQKKLIKKLAKSYDAFIASESLIKQIPR 60

Query: 418 FVG 426
            +G
Sbjct: 61  ILG 63


>AF099915-5|AAC68770.1|  118|Caenorhabditis elegans Hypothetical
           protein E02H9.4 protein.
          Length = 118

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 115 KDKKRNFLETVELQIGLKNYDPQKDKRFSGTVKLKYI 225
           K +K N  E VEL   +KNY P+ + R    V+ KY+
Sbjct: 41  KGEKYNGNEKVELTTTVKNYKPKNNTRKWPAVEAKYL 77


>Z70212-2|CAA94163.1|  430|Caenorhabditis elegans Hypothetical
           protein R04D3.3 protein.
          Length = 430

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = +1

Query: 7   YXLPSVVIGGSLTNKMSSKVSRDTLYECVNAVLQSSKDKKRNFLETVELQIGLKNYDPQK 186
           Y + S V G S+ + ++S   +D+L E ++ + +S K K    LET+  Q G K  D   
Sbjct: 183 YHIGSQVGGSSMEDVLTSD-EKDSLSEAISNLPKSPKSKTDRDLETL-AQSGSKTRDSHS 240

Query: 187 DKR 195
            +R
Sbjct: 241 RRR 243


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 646 QCFLSS--DTKEVDGKMHILSKLIRSHVHMANCYRKTQHLLHLELNGSLDFINLLRHGLL 473
           QC  SS  D K    + H+L +L++  V      R+T HLL   L  S +++ LLR   +
Sbjct: 532 QCVDSSPDDVKIALQRTHVLVELVKGFVQ-----RRTHHLLKKILPESKEYVLLLRKSQI 586

Query: 472 VGEKTREF 449
             +  R F
Sbjct: 587 QRQLYRNF 594


>AF038613-11|AAB92054.2|  836|Caenorhabditis elegans Mammalian
           elks/cast/erc/rab6 interactingprotein homolog protein 1
           protein.
          Length = 836

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 404 SRFPXLLGPGLNKAGKFPGLLSHQESMTQKIDEVKGTIK 520
           SR P   G GLN A ++  L    ++M +K+++   +IK
Sbjct: 143 SRIPTGTGSGLNIAREYEQLKVEYDTMMEKLNQTMNSIK 181


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,131,917
Number of Sequences: 27780
Number of extensions: 314649
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)