Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_A15
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 142 4e-35
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 27 2.3
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 3.0
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 27 3.0
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 26 4.0
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 5.3
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 9.3
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 25 9.3
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 9.3
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 142 bits (344), Expect = 4e-35
Identities = 70/131 (53%), Positives = 98/131 (74%), Gaps = 2/131 (1%)
Frame = +3
Query: 42 KIIKASGAEADSFETSISQALVELETNS-DLKAQLRELYITKAKEIELHN-KKSIIIYVP 215
KI+K S ++ + ++Q L +LE++S D+ +LR L IT A+E+E+ KK+I+++VP
Sbjct: 6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVP 65
Query: 216 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 395
P LKAF K Q RL RELEKKF+ +HV+F+ R+ILPKP K+RV QKRPRSRTLT+V
Sbjct: 66 QPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVT--QKRPRSRTLTAV 123
Query: 396 YDAILEDLVFP 428
++AILED+VFP
Sbjct: 124 HNAILEDIVFP 134
Score = 65.7 bits (153), Expect = 5e-12
Identities = 29/53 (54%), Positives = 37/53 (69%)
Frame = +1
Query: 433 EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 591
EI+GKR R DG + IKV LD T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 136 EIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/27 (59%), Positives = 17/27 (62%)
Frame = -3
Query: 334 LGLGRILRSPTKTTCLPLNFFSSSRTS 254
LG I +SPTK PLNFF SSR S
Sbjct: 33 LGTNVIAQSPTK----PLNFFHSSRWS 55
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 26.6 bits (56), Expect = 3.0
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +1
Query: 307 ETVRSCLSPATKPVLLTNKRGHAQ 378
E+ + ++ +TKPV +T+K GH++
Sbjct: 1069 ESTKPAVNNSTKPVAVTSKNGHSR 1092
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +3
Query: 204 IYVPMPKLKAFQKIQIRLVRELEKKFSGKHV 296
+++P K F+KI+ +VRE E+K +GK+V
Sbjct: 101 LHLPGQKFFEFEKIREEIVRETEEK-TGKNV 130
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 26.2 bits (55), Expect = 4.0
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +1
Query: 427 LXEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYKKLTGREVTFEFP 591
L + +GK+ ++ ++L VHL + TIE + F Q+V + T +F+ P
Sbjct: 578 LSKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQSTKSTASFQLP 633
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +1
Query: 532 DTFQSVYKKLTGREVTFEFPNLICKPSL*LYNKHKNL 642
D F+ VYKKLT E F N KPS+ N ++
Sbjct: 69 DNFRDVYKKLTENE-DDSFANQAEKPSMEQQNSKNSI 104
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 9.3
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 418 WSSLXEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVT 579
WS L ++ G + + + +K HL + ++ H++ + S K T E+T
Sbjct: 23 WSYLFKLFGITLLERTESWYTVKTHLSDDSSSSSSHRLSSV-SYAKSRTRLELT 75
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +1
Query: 544 SVYKKLTGREVTFEFPNLICKPSL*LYNKHKN 639
S+YK +TG+ ++ +F + I K + L +HKN
Sbjct: 518 SIYKLVTGKNLSLDFASQILKEASIL--EHKN 547
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 9.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 512 VCWFLSKCTLMSCEPSNLTLMR 447
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,503,046
Number of Sequences: 5004
Number of extensions: 49730
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -