Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP10_F_A08
(442 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 87 9e-19
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 85 5e-18
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 83 2e-17
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.3
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 1.3
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 1.7
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 27 1.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 2.2
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 26 3.0
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 25 3.9
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 3.9
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 25 5.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos... 24 9.0
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 24 9.0
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 87.4 bits (207), Expect = 9e-19
Identities = 36/63 (57%), Positives = 54/63 (85%)
Frame = +1
Query: 73 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 252
YLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIAAG EKL+++P
Sbjct: 7 YLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVP 66
Query: 253 VGG 261
GG
Sbjct: 67 TGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 85.0 bits (201), Expect = 5e-18
Identities = 36/63 (57%), Positives = 54/63 (85%)
Frame = +1
Query: 73 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 252
YLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIAAG EKLS++P
Sbjct: 7 YLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVP 66
Query: 253 VGG 261
G
Sbjct: 67 SAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 83.0 bits (196), Expect = 2e-17
Identities = 34/63 (53%), Positives = 54/63 (85%)
Frame = +1
Query: 73 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGREKLSSMP 252
YLL +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIAAG EKL+++P
Sbjct: 7 YLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVP 66
Query: 253 VGG 261
GG
Sbjct: 67 SGG 69
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.1 bits (57), Expect = 1.3
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -3
Query: 191 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTAS 78
SSV T LS S S+SIP + STS ++ V+P S++S
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSS 47
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 1.3
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -3
Query: 263 PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSP----SASIPTELRIFSTSAAAGVVL 96
PPP SFS I+ ++ +P SS T + SP S+ +P+ + I S S ++ VL
Sbjct: 190 PPPASSTSSFS---TITNTSMIPSSSSFTTTTGSPYYNTSSFLPSSV-ISSASLSSSSVL 245
Query: 95 PPS 87
P S
Sbjct: 246 PTS 248
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +2
Query: 389 TKLYKSTRRWSLFQFMFY 442
TKL K TRR SLF+F F+
Sbjct: 317 TKLMKYTRRKSLFRFPFF 334
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 26.6 bits (56), Expect = 1.7
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 143 TELRIFSTSAAAGVVLPPSTASK*RGHVTHFLSPKLTRN 27
T + S G VLPP + + GH F+ L N
Sbjct: 75 TATHVHGASGFEGAVLPPPSRKENEGHAVDFIIDTLRNN 113
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 2.2
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 6/82 (7%)
Frame = -3
Query: 260 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVV 99
PPTG S S P + STS+P+ T + + S+ +PT STS
Sbjct: 179 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTS 234
Query: 98 LPPSTASK*RGHVTHFLSPKLT 33
+P +S +T + P T
Sbjct: 235 IPTGGSSSLSTPITPTVPPTST 256
Score = 24.2 bits (50), Expect = 9.0
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 227 PAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPS 87
P + STS+P+ T + + S+ +PT STS +PP+
Sbjct: 252 PPTSTSSTSIPIPPTSTSSTDTNSSPLPTT----STSCTTSTSIPPT 294
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 25.8 bits (54), Expect = 3.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 221 AISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 78
++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 79 SLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 25.4 bits (53), Expect = 3.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -3
Query: 239 SFSRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 81
SF P+A + S P+SS+ +F + S +++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 3.9
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = -3
Query: 206 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTA 81
T LP ++V T SFS SAS T +++ +V PPST+
Sbjct: 37 TPLPSANVTT-TSFS-SASTETSTHSVTSTNITSIVPPPSTS 76
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.0 bits (52), Expect = 5.2
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 206 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 78
+ L + S T +S S S+PT+ + T + + V PPS S
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQS 568
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 6.8
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 257 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSPSASIPTELRIFSTSAAAGVVLPPS 87
PT S+ +++ S+S P SS +T S S S+ T STS++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 86 TAS 78
TAS
Sbjct: 262 TAS 264
>SPAC2E1P3.05c |||fungal cellulose binding domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 24.2 bits (50), Expect = 9.0
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 233 SRPAAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 78
S P+A+S +TS+P S+ + +S S S S T L S+S + V+ +T S
Sbjct: 139 SSPSAVSSTTSIP--SISSTISSSVSTSSFTSL---SSSGFSTVLSSTNTTS 185
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 24.2 bits (50), Expect = 9.0
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 88 LGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQ 213
L ++T + E+ + G+E+ G+K K ++ E NGK +++
Sbjct: 1335 LFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDK 1377
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,970
Number of Sequences: 5004
Number of extensions: 19211
Number of successful extensions: 91
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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