Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_A07
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.02c |p23fy||translationally controlled tumor protein ho...    44   7e-06
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   4.4  
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    24   5.8  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   5.8  
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc...    24   7.6  

>SPAC1F12.02c |p23fy||translationally controlled tumor protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 168

 Score = 44.0 bits (99), Expect = 7e-06
 Identities = 25/57 (43%), Positives = 36/57 (63%)
 Frame = +2

Query: 173 DIXIEGFNPSAEEADEGTDSAVESGVDIXLNHRLXXTYAFGDKKSYTLYLKDYMKKL 343
           D+ I G NPSAE+A+E  +   E+  ++  + RL  T +F DKKSY  Y+K YMK +
Sbjct: 42  DVDI-GANPSAEDAEENAEEGTETVNNLVYSFRLSPT-SF-DKKSYMSYIKGYMKAI 95



 Score = 35.1 bits (77), Expect = 0.003
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = +1

Query: 82  DEMFSDTYKMKLVDEVIYEVTGRLVTRAQG 171
           DE+ SD Y +K VD+++YE   ++VT  QG
Sbjct: 11  DELVSDAYDLKEVDDIVYEADCQMVTVKQG 40


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 180 WISALCSRHQPTGHFVNNFIDQF 112
           W S  CS+   TG   +NFI  F
Sbjct: 216 WFSRRCSKINITGSVFDNFIPSF 238


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 61  IRTLSLADEMFSDTYK 108
           + TL+LAD+MFS T K
Sbjct: 444 LSTLALADDMFSSTAK 459


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 119 TNFIL*VSENISSASDNVLIDLHFDGVGGGLKIIK 15
           TN +L    ++ +  ++ +  LH+  VGG LK +K
Sbjct: 150 TNCLLRWGADVLATDEDKMTPLHWSIVGGNLKCMK 184


>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 162 SRHQPTGHFVNNFIDQFHFVSVREH 88
           SRH+   HFV +F D  ++  V E+
Sbjct: 65  SRHRNIIHFVESFEDNVYYYVVLEY 89


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,178,627
Number of Sequences: 5004
Number of extensions: 18229
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)