Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP10_F_A07
         (346 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0628 - 25643006-25643123,25643314-25643471,25643559-256436...    38   0.003
03_02_0983 - 12933082-12934884,12935669-12936487,12936754-129367...    27   3.9  
09_02_0062 - 3742857-3743045,3744641-3744916,3745933-3745992,374...    26   6.9  
11_06_0025 - 19341127-19341339,19341426-19341620,19341912-193420...    26   9.1  
11_06_0024 - 19331250-19331380,19331412-19331484,19331571-193317...    26   9.1  
07_03_1733 + 29117547-29118203                                         26   9.1  
04_01_0011 + 207319-207605,207935-208184,208559-208729                 26   9.1  

>11_06_0628 -
           25643006-25643123,25643314-25643471,25643559-25643687,
           25644378-25644451,25644771-25644798
          Length = 168

 Score = 37.5 bits (83), Expect = 0.003
 Identities = 26/66 (39%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = +2

Query: 152 W*REHRADIXIEGFNPSAEEA--DEGTDSAVESGVDIXLNHRLXXTYAFGDKKSYTLYLK 325
           W  +   D+ I G NPSAE    DEG D      VDI    RL     F DKK +  ++K
Sbjct: 35  WVVQGAIDVDI-GANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPPF-DKKQFVTFMK 92

Query: 326 DYMKKL 343
            Y+K L
Sbjct: 93  RYIKNL 98


>03_02_0983 -
           12933082-12934884,12935669-12936487,12936754-12936795,
           12937116-12937244
          Length = 930

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -3

Query: 131 ITSSTNFIL*VSENISSA-SDNVLIDLHFDGVGGGLKIIKTG 9
           +T  T++   VS+ +    +D VL+++  DG+G G+   K G
Sbjct: 467 LTKGTHYFDSVSDVLKKVVADPVLLEIEVDGMGNGVNAEKNG 508


>09_02_0062 -
           3742857-3743045,3744641-3744916,3745933-3745992,
           3746554-3748102,3748183-3748418
          Length = 769

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +2

Query: 161 EHRADIXIEGFNPSAEEADEGTDSAVESGVDIXLNHRLXXTYAFGDKK 304
           + +  + I   N S EE +E  ++A    VD+ LN        +G+KK
Sbjct: 706 QEKFSVSINYENASLEEVEEA-EAAARYAVDVHLNRPTLELKRYGEKK 752


>11_06_0025 -
           19341127-19341339,19341426-19341620,19341912-19342088,
           19342505-19342672,19343533-19343574,19344129-19344214,
           19345218-19345545
          Length = 402

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 64  RTLSLADEMFSDTYKMKLVDE 126
           R +  +DEMFSD  + KL+D+
Sbjct: 325 RKIDKSDEMFSDDVRSKLLDD 345


>11_06_0024 -
           19331250-19331380,19331412-19331484,19331571-19331768,
           19333317-19333484,19334187-19334263,19335321-19335423
          Length = 249

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 64  RTLSLADEMFSDTYKMKLVDE 126
           R +  +DEMFSD  + KL+D+
Sbjct: 175 RKIDKSDEMFSDDVRSKLLDD 195


>07_03_1733 + 29117547-29118203
          Length = 218

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 188 PRXGYQPCALVTNLPVTS*ITSSTNFIL*VSENISSASDNVLIDLHFDGVGGGLKI 21
           P     PCA  T+  +T  +  S++     S   SS+S   L D    G GGG  +
Sbjct: 9   PHAALLPCAAFTDADITRALHFSSSMPDTSSSPSSSSSAAFLADFCGGGAGGGFVV 64


>04_01_0011 + 207319-207605,207935-208184,208559-208729
          Length = 235

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = +2

Query: 236 VESGVDIXLNHRLXXTYAFGDKKS-YTLYLKDYMKKL 343
           + + +DI  NHRL     F D++  Y+L+L  +++++
Sbjct: 59  INAALDIVDNHRLDGVLYFADEEGVYSLHLFHHLRQI 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,440,355
Number of Sequences: 37544
Number of extensions: 114716
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)