Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_P12
(602 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125 31 0.93
11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715 30 1.6
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 30 1.6
07_01_0986 - 8314733-8314783,8315895-8318381 30 1.6
08_01_0612 + 5378190-5378251,5378926-5379244,5379381-5379671,538... 29 2.1
07_03_1106 + 24017601-24019955 29 2.8
06_03_1207 + 28418473-28421073 29 2.8
04_01_0328 - 4330904-4333129 29 3.7
12_01_1047 + 10765856-10767784 28 5.0
04_04_1658 - 35119623-35119754,35121033-35121121,35121205-351215... 28 5.0
03_02_0102 + 5637469-5639064 28 5.0
10_08_0510 + 18430580-18431781,18433176-18433554 28 6.5
08_01_0055 - 375343-375567,375672-377540 28 6.5
03_06_0033 - 31186076-31186189,31186274-31186396,31186524-311867... 28 6.5
05_03_0427 - 13886814-13887935 27 8.7
>07_03_0573 + 19614899-19617155,19617384-19617476,19618103-19618125
Length = 790
Score = 30.7 bits (66), Expect = 0.93
Identities = 19/47 (40%), Positives = 23/47 (48%)
Frame = +2
Query: 461 KEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKVXK 601
KEAL E GF SY L+ LL + F E R+FEK+ K
Sbjct: 652 KEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKMRK 698
>11_04_0004 + 12013207-12013280,12013311-12013756,12013865-12014715
Length = 456
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Frame = +2
Query: 113 RLFLPCRQLHSTQVRLLYAP-ATIGIDGY------LQARKNVKEQFVNFSEKFKTKMNDF 271
R F+P S RL + +D Y L +R V E +F +ND
Sbjct: 210 RRFVPEHYTRSLYTRLQQLKQGDLSVDAYYKEMELLMSRTGVTENDEATMARFLNGLNDD 269
Query: 272 VSDSKNMIFTEDLKNMVHLAEPSDLQL 352
V + + + D+++MVH+A+ + QL
Sbjct: 270 VKERVEISYYYDIQSMVHIAQRVEQQL 296
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 29.9 bits (64), Expect = 1.6
Identities = 26/74 (35%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Frame = +2
Query: 377 NTQS-TEFRFGSFV-FGPVVMRMFHFLDAPKEALQCFEEPAND---GFFDQQ----VSYQ 529
NT S T RFG+ + PV + +F L A AND FD + +SY
Sbjct: 1397 NTNSGTAPRFGALADYNPVYITLFRELSQQGGARLFLPTGANDVVIPVFDDEPTSIISYA 1456
Query: 530 ILLDLLYCHEMFDE 571
L+ +YCH+M DE
Sbjct: 1457 -LVSPMYCHQMLDE 1469
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 461 KEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKV 595
+EA + FE + G V+Y L+D L DE YR+FEK+
Sbjct: 440 EEAYKIFESASQRGCNPDCVTYCSLIDGLGKKGQVDEAYRLFEKM 484
>08_01_0612 +
5378190-5378251,5378926-5379244,5379381-5379671,
5380520-5380768,5380843-5380967,5381487-5381585,
5381668-5382352
Length = 609
Score = 29.5 bits (63), Expect = 2.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 461 KEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKVXK 601
+EAL FEE + G + SY IL+D + +E + VF+ + +
Sbjct: 334 EEALAVFEEMLDAGVRPTRKSYNILIDAFAISGLVEEAHTVFKAMRR 380
>07_03_1106 + 24017601-24019955
Length = 784
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 461 KEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKVXK 601
KEA Q F+E GF +V++ LLD+ DE V +++ +
Sbjct: 260 KEAAQVFDEMKASGFEPDKVTFNSLLDVYGKARRHDEAIEVIQEMER 306
>06_03_1207 + 28418473-28421073
Length = 866
Score = 29.1 bits (62), Expect = 2.8
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = +2
Query: 353 VLNMIKKFNTQSTEFRFGSFVFGPVVMRMFHFLDAPKEALQCFEEPANDGFFDQQVSYQI 532
VL M+++ Q + + S ++G V + H +A+ + DG ++Y
Sbjct: 359 VLKMMERDGCQPNAWTYNSLMYGLVKDKKLH------KAMALLTKMQKDGIIPNVITYTT 412
Query: 533 LLDLLYCHEMFDEMYRVFE 589
LL FD +R+FE
Sbjct: 413 LLQGQCDEHDFDNAFRLFE 431
>04_01_0328 - 4330904-4333129
Length = 741
Score = 28.7 bits (61), Expect = 3.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 209 SWPVNTHLFQLLQGHTAASLV*NVIACRVKTIVDY 105
+W V T ++ LL G TAA+ V ++ ++T+ DY
Sbjct: 510 TWHVATEIYLLLSGRTAAAAVARLVR-TIRTLSDY 543
>12_01_1047 + 10765856-10767784
Length = 642
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 467 ALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKVXK 601
A+ F+ + G VSY LL L +++DE RV+E + K
Sbjct: 413 AVDIFKRMIDQGLTPDVVSYGALLSALEKGKLYDEALRVWEHMCK 457
>04_04_1658 -
35119623-35119754,35121033-35121121,35121205-35121599,
35122009-35122091,35122163-35124184,35124859-35124927,
35125050-35125130,35125215-35125308,35125435-35125499,
35125961-35126038,35126115-35126360
Length = 1117
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 461 KEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKV 595
+EA+ FEE +G +V+Y LL + DE R F ++
Sbjct: 613 REAIDLFEEMQEEGVEADEVAYLALLSACSHSGLVDECRRYFSRI 657
>03_02_0102 + 5637469-5639064
Length = 531
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 428 VMRMFHFLDAPKEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKV 595
++R+ H +AL+ + + N+GF + +L DLL DE R F ++
Sbjct: 397 IVRLCHRHGRVAQALELWSDMVNNGFGSFTLVSDVLFDLLCDEGKLDEAERCFHQM 452
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 458 PKEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKVXK 601
PKEA+ ++ +DG V+Y L+D L + E ++F+ + K
Sbjct: 167 PKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTK 214
>08_01_0055 - 375343-375567,375672-377540
Length = 697
Score = 27.9 bits (59), Expect = 6.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = +2
Query: 458 PKEALQCFEEPANDGFFDQQVSYQILLDLLYCHEMFDEMYRVFEKVXK 601
PKEA+ F++ G V+Y L+D L + E ++F+ + K
Sbjct: 293 PKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVK 340
>03_06_0033 -
31186076-31186189,31186274-31186396,31186524-31186718,
31186805-31186930,31187024-31187186,31187270-31187405,
31187557-31187916,31188026-31188124,31188222-31188489
Length = 527
Score = 27.9 bits (59), Expect = 6.5
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 8/99 (8%)
Frame = +2
Query: 257 KMNDFVSDSKNMIFTEDLKNMVHLAEPSDLQLVL---NMIKKFNTQSTEFR-FGSFVFGP 424
++ F DS N+ +TE LK + L P DLQL +++ +N + R F GP
Sbjct: 393 RVKGFPVDS-NVPYTERLKILAGLVNPDDLQLSAAERKLVQTYNQKPVLSRPQHKFFKGP 451
Query: 425 ----VVMRMFHFLDAPKEALQCFEEPANDGFFDQQVSYQ 529
+ + + F ++ L+ F E G D ++ Q
Sbjct: 452 NYFEIDLDVHRFSFISRKGLEAFRERLKHGVLDLGLTIQ 490
>05_03_0427 - 13886814-13887935
Length = 373
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 201 CKYPSIPIVAGAYSSLTCVECNCLQGKNNR*LQLKEVFKK*F--RNRDMFY 55
C Y S A ++ C N L ++ +Q K+V+KK + ++RD+ +
Sbjct: 155 CSYKSSTAKVAAVDNMVCARDNSLADIHDLLVQAKQVYKKYYGAKHRDLVF 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,930
Number of Sequences: 37544
Number of extensions: 287553
Number of successful extensions: 698
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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