Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_P11
(383 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces... 67 1e-12
SPBC342.06c |rtt109|kat11|RTT109 family histone lysine acetyltra... 25 3.1
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c... 25 3.1
SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces pombe... 25 5.4
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 5.4
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 24 7.1
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 24 7.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 24 7.1
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po... 24 7.1
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch... 24 7.1
>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 61
Score = 66.9 bits (156), Expect = 1e-12
Identities = 30/53 (56%), Positives = 37/53 (69%)
Frame = +2
Query: 50 MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLVHGSKIFKESKVLQEG*PEA 208
MAKSKNHTNHNQN+KAHRNGIK+P+K R++S +K + K G EA
Sbjct: 1 MAKSKNHTNHNQNKKAHRNGIKRPQKHRYDSLKYRDAKFRRNQKFANRGTVEA 53
>SPBC342.06c |rtt109|kat11|RTT109 family histone lysine
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 369
Score = 25.4 bits (53), Expect = 3.1
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +2
Query: 23 FKVD*KLIKMAKSKNHTNHNQNRKAHRNGIKKPRK 127
+K+D + +AK + NHN ++ A + I +PRK
Sbjct: 333 YKLD--ICGLAKRDDRKNHNHSKPATQANILQPRK 365
>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 3.1
Identities = 15/51 (29%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +2
Query: 38 KLIKMAKS-KNHTNHNQNRKAHRNGIKKPRKTRHESTLVHGSKIFKESKVL 187
+L+ +A S K H+ + ++K+++NG KK RK +S H + +++L
Sbjct: 169 RLLDLALSEKTHSLNKASKKSNKNGDKK-RKHVSKSNSKHAKHELRTNRML 218
>SPAC1687.05 |pli1||SUMO E3 ligase Pli1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 727
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +3
Query: 81 TKTAKLTEMVSKSQGRPGTN 140
T A +T++VSK G PG N
Sbjct: 220 TNPADITDLVSKYAGPPGNN 239
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 24.6 bits (51), Expect = 5.4
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +2
Query: 92 KAHRNG-IKKPRKTRHEST-LVHGSKIFKESKVLQEG 196
+ H G I KPRK R EST VH +I KES ++G
Sbjct: 350 EVHLTGEILKPRKKRQESTSSVH--RIGKESSDRKDG 384
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 24.2 bits (50), Expect = 7.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 68 HTNHNQNRKAHRNGIKKPRKTRHES 142
HTN +NR+ + G K R R E+
Sbjct: 887 HTNPQENRRRDKGGSVKRRNERTEN 911
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 7.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 58 LCHFDEFSIHFESED 14
+CHF+E SI ES++
Sbjct: 1 MCHFNELSIEIESKN 15
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 24.2 bits (50), Expect = 7.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 6 LVLSSDSKWIENSSKWQSQRIIQ 74
L+ + S+W S +W+S R IQ
Sbjct: 1462 LIFCTPSQWDSLSKRWRSMRSIQ 1484
>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 328
Score = 24.2 bits (50), Expect = 7.1
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 80 NQNRKAHRNGIKKPRKTRHESTLVHGSKIFKESKVLQEG 196
N N + + K RH ++L + K+ E+KVL +G
Sbjct: 189 NANYPFNPQEVNTLNKHRHSASLQNLYKLLDENKVLMQG 227
>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = +2
Query: 38 KLIKMAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLVH 154
+L + +S TN +Q + H N KT H+ H
Sbjct: 138 QLTQQQQSLPQTNEHQRARTHSNANNHFTKTHHQGQRSH 176
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,222,124
Number of Sequences: 5004
Number of extensions: 21156
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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