Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_P11
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical pr...    57   5e-09
AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical...    48   2e-06
AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical ...    45   2e-05
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p...    30   0.64 
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p...    30   0.64 
Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical p...    30   0.64 
Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical p...    30   0.64 
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p...    30   0.64 
Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical pr...    30   0.64 
Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical pr...    30   0.64 
Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical pr...    30   0.64 
AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger t...    30   0.64 
AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger t...    30   0.64 
AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical ...    28   2.6  
AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical ...    28   2.6  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    27   4.5  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    27   4.5  
U58742-1|AAB36857.2|  170|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>Z82256-2|CAB05115.1|   62|Caenorhabditis elegans Hypothetical
           protein B0513.3 protein.
          Length = 62

 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +2

Query: 50  MAKSKNHTNHNQNRKAHRNGIKKPRK 127
           MAKSKNHTNHNQN+KAHRNGI KP+K
Sbjct: 1   MAKSKNHTNHNQNKKAHRNGITKPKK 26


>AL032657-13|CAB76744.1|   87|Caenorhabditis elegans Hypothetical
           protein Y47H9C.14 protein.
          Length = 87

 Score = 48.0 bits (109), Expect = 2e-06
 Identities = 21/36 (58%), Positives = 26/36 (72%)
 Frame = +2

Query: 56  KSKNHTNHNQNRKAHRNGIKKPRKTRHESTLVHGSK 163
           K +NHTNHN+N KAHRNGI KP+K  H    + GS+
Sbjct: 14  KPENHTNHNRNNKAHRNGITKPKK--HIFLSIEGSR 47


>AL032625-6|CAN86641.1|  167|Caenorhabditis elegans Hypothetical
           protein Y37H9A.5 protein.
          Length = 167

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 56  KSKNHTNHNQNRKAHRNGIKKPR---KTRHESTLVHGSKIFKESKVLQEG*PEASQATRE 226
           KSKNHTNHNQN  AHR GI KP+           VH     + S++ Q   P   ++ R 
Sbjct: 80  KSKNHTNHNQNNTAHRIGITKPKIFLSIEGSRRQVHQEPPLRGSRLPQCKIPRLQRSDRS 139

Query: 227 G 229
           G
Sbjct: 140 G 140


>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
           protein T05A10.1a protein.
          Length = 2066

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 655 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 714

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 715 CSGKRDNKDPSK 726


>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
           protein T05A10.1f protein.
          Length = 2048

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 723 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 782

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 783 CSGKRDNKDPSK 794


>Z68108-12|CAF31492.1| 2101|Caenorhabditis elegans Hypothetical
           protein T05A10.1e protein.
          Length = 2101

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 723 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 782

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 783 CSGKRDNKDPSK 794


>Z68108-11|CAF31491.1| 2134|Caenorhabditis elegans Hypothetical
           protein T05A10.1d protein.
          Length = 2134

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 723 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 782

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 783 CSGKRDNKDPSK 794


>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
           protein T05A10.1g protein.
          Length = 1888

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 723 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 782

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 783 CSGKRDNKDPSK 794


>Z68108-9|CAF31489.1| 1927|Caenorhabditis elegans Hypothetical
           protein T05A10.1i protein.
          Length = 1927

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 723 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 782

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 783 CSGKRDNKDPSK 794


>Z68108-8|CAF31488.1| 1509|Caenorhabditis elegans Hypothetical
           protein T05A10.1j protein.
          Length = 1509

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 723 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 782

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 783 CSGKRDNKDPSK 794


>Z68108-7|CAF31487.1| 1692|Caenorhabditis elegans Hypothetical
           protein T05A10.1c protein.
          Length = 1692

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 281 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 340

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 341 CSGKRDNKDPSK 352


>AY389810-1|AAR28682.1|  781|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 781

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 303 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 362

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 363 CSGKRDNKDPSK 374


>AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 0.64
 Identities = 17/72 (23%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
 Frame = +3

Query: 6   LVLSSDSKWIENSSKWQSQRIIQII-TKTAKLTEMVSKSQG-RPGTNPPLCMDPKFLRNQ 179
           + + S+ +++EN+ ++Q++ IIQ +     ++TEM+ + +    G  P L +  + + + 
Sbjct: 655 MTVESEKQYLENAEEYQAKGIIQALPCDNLEVTEMLKQQETIMKGQVPDLLVSTQAVLHH 714

Query: 180 RFCKKGNLKPAK 215
              K+ N  P+K
Sbjct: 715 CSGKRDNKDPSK 726


>AL031635-9|CAH04762.1| 1136|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5b protein.
          Length = 1136

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 3   LLVLSSDSKWIEN--SSKWQSQRIIQIITKTAKLTE 104
           L +LS   KW+ +  S KWQ  RI   IT+ AK+T+
Sbjct: 271 LAILSKCGKWMTDSLSEKWQQHRI--QITEKAKMTK 304


>AL031635-8|CAA21041.2| 1088|Caenorhabditis elegans Hypothetical
           protein Y47D3B.5a protein.
          Length = 1088

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +3

Query: 3   LLVLSSDSKWIEN--SSKWQSQRIIQIITKTAKLTE 104
           L +LS   KW+ +  S KWQ  RI   IT+ AK+T+
Sbjct: 271 LAILSKCGKWMTDSLSEKWQQHRI--QITEKAKMTK 304


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 110  YHFCELCGFGYDLYDSL 60
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 110  YHFCELCGFGYDLYDSL 60
            Y+FC++CGFG    DS+
Sbjct: 1685 YYFCKVCGFGSTSADSV 1701


>U58742-1|AAB36857.2|  170|Caenorhabditis elegans Hypothetical
           protein F31A3.3 protein.
          Length = 170

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 59  SKNHTNHNQNRKAHRNGIKKPRKTRHESTLVHGSKIFKESKVLQEG*P 202
           ++  +N+NQ    ++  +KKP K +    L   +K FKE  V+++  P
Sbjct: 17  NRKSSNNNQENAVNQMVVKKPIKRKTALPLQVPAKKFKEVVVVEQPSP 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,712,509
Number of Sequences: 27780
Number of extensions: 117594
Number of successful extensions: 454
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)