Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_P07
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    55   6e-09
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   4.5  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.8  

>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 55.2 bits (127), Expect = 6e-09
 Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 15/169 (8%)
 Frame = +2

Query: 101 KVFNFGAGPAKLPEEVYXXXXXXXXXXXXXGISLLETSHRSSTYMKLNVEIQDVVRNLLD 280
           +V NF AGPA +   V              G+ + E SHRS     +    +   R L +
Sbjct: 6   EVVNFAAGPAAMITSVVEEFGKDFVNFQGLGMGVAEISHRSKQGSGIVTSAESNFRKLYN 65

Query: 281 VPDNYKVXXXXXXXXXXXXXVPLNLI---------SRTGTADYVVTGAWSXXXXXXXXXY 433
           +P+N+ +                N+          +++  A+Y++TGAWS          
Sbjct: 66  IPENFHILFMQGGGTEQFAACLYNVYAHHALKNGNAKSLVANYIITGAWSKKAYAEAERL 125

Query: 434 GKVNXVLPP----TDKYEDIPD--QTKWNLDPHASYVHICTNETIHGVE 562
           G    V         KY  +P+    K+  D   S V+ C NET+HGVE
Sbjct: 126 GFPCHVAVDMKELAGKYGSLPEDKDLKFTPDGETSLVYYCDNETVHGVE 174


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 356 LSLKEQLQIDQDPHQLKTALCSCPVHLISFAQ 261
           L+LK+ + I  + H L  A+CS     ISF Q
Sbjct: 352 LTLKDNICIIDEAHNLIDAICSMHSSSISFRQ 383


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 194  ISLLETSHRSSTYMKLNVEIQDVVRNLL 277
            +SLL  S  S++Y  L +   D+V N+L
Sbjct: 1208 LSLLSDSLNSTSYRLLGISCSDMVSNIL 1235


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,317
Number of Sequences: 5004
Number of extensions: 32162
Number of successful extensions: 80
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)