Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_P07
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                           88   5e-18
03_06_0756 - 36032432-36033871                                         28   4.6  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   6.0  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score = 87.8 bits (208), Expect = 5e-18
 Identities = 52/155 (33%), Positives = 73/155 (47%), Gaps = 2/155 (1%)
 Frame = +2

Query: 104 VFNFGAGPAKLPEEVYXXXXXXXXXXXXXGISLLETSHRSSTYMKLNVEIQDVVRNLLDV 283
           V+NF AGPA LP  V              G+S++E SHR   +     + +  +R LL V
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKKAEADLRALLAV 124

Query: 284 PDNYKVXXXXXXXXXXXXXVPLNL-ISRTGTADYVVTGAWSXXXXXXXXXYGKVNXVLPP 460
           PD ++V              PLNL  S +  AD+VV+G+WS         +   +     
Sbjct: 125 PDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVSGSWSDKAFKEAKKFSAASVAWSG 184

Query: 461 TD-KYEDIPDQTKWNLDPHASYVHICTNETIHGVE 562
            D KY  +P       +P A ++HIC+NETIHGVE
Sbjct: 185 KDGKYTSLPPFDAIEQNPEARFLHICSNETIHGVE 219


>03_06_0756 - 36032432-36033871
          Length = 479

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -2

Query: 480 MSSYLSVGGSTXFTFPYFFASLXALADHAPVT 385
           + SYLS  G    T P  FAS  ALA H P+T
Sbjct: 162 LKSYLSAQG---VTLPTLFASALALALHVPLT 190


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 440 VNXVLPP-TDKYEDIPDQTKWNLDPHASY 523
           V+  LP  TDK   + D  KW+LDP  +Y
Sbjct: 885 VSKSLPERTDKSTSLDDSKKWHLDPAKTY 913


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,268,338
Number of Sequences: 37544
Number of extensions: 193415
Number of successful extensions: 363
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)