Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_P01
         (374 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal prot...   190   4e-49
X13625-1|CAB38441.1|  114|Drosophila melanogaster protein ( Dros...   190   4e-49
AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p pro...   190   4e-49
AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-P...   190   4e-49
AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-P...   190   4e-49
AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-P...   190   4e-49
AY070900-1|AAL48522.1|  463|Drosophila melanogaster RE01590p pro...    29   2.6  
AE014134-1736|AAF52836.1|  463|Drosophila melanogaster CG13126-P...    29   2.6  
AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p pro...    28   4.5  
AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-P...    28   4.5  

>X14247-1|CAA32463.1|  114|Drosophila melanogaster ribosomal protein
           S31 protein.
          Length = 114

 Score =  190 bits (464), Expect = 4e-49
 Identities = 87/108 (80%), Positives = 95/108 (87%)
 Frame = +1

Query: 46  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 225
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 226 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRTIRTPPXSNFPTDMSR 369
            + LPKLYAKLHYCVSCAIHSKVVRNRS + R IRTPP  +FP DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>X13625-1|CAB38441.1|  114|Drosophila melanogaster protein (
           Drosophila melanogastermRNA for putative ribosomal
           protein S31. ).
          Length = 114

 Score =  190 bits (464), Expect = 4e-49
 Identities = 87/108 (80%), Positives = 95/108 (87%)
 Frame = +1

Query: 46  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 225
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 226 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRTIRTPPXSNFPTDMSR 369
            + LPKLYAKLHYCVSCAIHSKVVRNRS + R IRTPP  +FP DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY069761-1|AAL39906.1|  114|Drosophila melanogaster RE01079p
           protein.
          Length = 114

 Score =  190 bits (464), Expect = 4e-49
 Identities = 87/108 (80%), Positives = 95/108 (87%)
 Frame = +1

Query: 46  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 225
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 226 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRTIRTPPXSNFPTDMSR 369
            + LPKLYAKLHYCVSCAIHSKVVRNRS + R IRTPP  +FP DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2931|AAN11005.1|  114|Drosophila melanogaster CG10305-PC,
           isoform C protein.
          Length = 114

 Score =  190 bits (464), Expect = 4e-49
 Identities = 87/108 (80%), Positives = 95/108 (87%)
 Frame = +1

Query: 46  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 225
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 226 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRTIRTPPXSNFPTDMSR 369
            + LPKLYAKLHYCVSCAIHSKVVRNRS + R IRTPP  +FP DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2930|AAF53666.1|  114|Drosophila melanogaster CG10305-PB,
           isoform B protein.
          Length = 114

 Score =  190 bits (464), Expect = 4e-49
 Identities = 87/108 (80%), Positives = 95/108 (87%)
 Frame = +1

Query: 46  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 225
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 226 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRTIRTPPXSNFPTDMSR 369
            + LPKLYAKLHYCVSCAIHSKVVRNRS + R IRTPP  +FP DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AE014134-2929|AAN11004.1|  114|Drosophila melanogaster CG10305-PA,
           isoform A protein.
          Length = 114

 Score =  190 bits (464), Expect = 4e-49
 Identities = 87/108 (80%), Positives = 95/108 (87%)
 Frame = +1

Query: 46  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 225
           MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++ 
Sbjct: 1   MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60

Query: 226 MFQLPKLYAKLHYCVSCAIHSKVVRNRSXKDRTIRTPPXSNFPTDMSR 369
            + LPKLYAKLHYCVSCAIHSKVVRNRS + R IRTPP  +FP DM+R
Sbjct: 61  SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPKDMAR 108


>AY070900-1|AAL48522.1|  463|Drosophila melanogaster RE01590p
           protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 133 RTARSLCISRL*RDHVHAWRVLHYGAYES 47
           R  R L I++     ++AW+ + YGAYES
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYES 159


>AE014134-1736|AAF52836.1|  463|Drosophila melanogaster CG13126-PA
           protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 133 RTARSLCISRL*RDHVHAWRVLHYGAYES 47
           R  R L I++     ++AW+ + YGAYES
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYES 159


>AY061244-1|AAL28792.1|  664|Drosophila melanogaster LD18373p
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 73  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 174
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


>AE014298-1641|AAF48061.1|  664|Drosophila melanogaster CG11696-PA
           protein.
          Length = 664

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +1

Query: 73  RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 174
           +A H  G V  V+CT C R +  +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,612,255
Number of Sequences: 53049
Number of extensions: 282065
Number of successful extensions: 699
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 982468965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)