Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_O21
(338 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 0.59
SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual 26 1.4
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 26 1.8
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 3.2
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr... 25 4.2
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 24 5.5
SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5 |Schizo... 24 7.3
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 24 7.3
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 23 9.6
SPBC887.14c |pfh1|pif1|pif1 helicase homolog Pfh1|Schizosaccharo... 23 9.6
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 23 9.6
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 0.59
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 13 SKKNEVSVLDKNSNKFDNLSHTAKLFR 93
+ +NE + + K SN DNL+ +++LFR
Sbjct: 263 NSQNEHTEVQKKSNSIDNLTPSSELFR 289
>SPCC550.11 |||karyopherin|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1029
Score = 26.2 bits (55), Expect = 1.4
Identities = 9/37 (24%), Positives = 25/37 (67%)
Frame = +3
Query: 180 YVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLLPV 290
Y++ ++ ++S+ + SP+ + E+++ ++R +LPV
Sbjct: 58 YLKNRVSRSWSSIDDAPSPLDIPEEQKALFRQNILPV 94
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 1.8
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 336 FDSFHWYTAREQHVHELAIGGTCTQLF 256
FD WYT R + + L+I QLF
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLF 135
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 25.0 bits (52), Expect = 3.2
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = -2
Query: 295 P*TGNRRHLYTTLRSSQSLTGDNHSPTLAYHAAIDFLT*R-S*NIHLQPFLLCISPLIKK 119
P T LY + + LTG+ + T A A+ + + I ++P +LC+S I
Sbjct: 262 PETSEWHLLYKRAKRLRELTGNPNYKTEAEIASSQLSKGQFAKQILVRPIILCVSEPIVL 321
Query: 118 FLTVNLSLF*TIL 80
LT+ + L +IL
Sbjct: 322 SLTIYIGLVYSIL 334
>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 24.6 bits (51), Expect = 4.2
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +1
Query: 43 KNSNKFDNLSHTAKLFRIKINSRSRIF*SRG*YIVKMAVNVYSTNVTSEN 192
+++N F N L ++ S SRI+ ++ ++K + + N +EN
Sbjct: 65 QSNNPFLNKDSGVDLLKLHSRSNSRIYEAKPKRVIKPKIAIIECNEMAEN 114
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 24.2 bits (50), Expect = 5.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 154 PFLLCISPLIKKFLTV 107
PFLLC SP I +TV
Sbjct: 238 PFLLCFSPSIIMLITV 253
>SPBC19G7.14c |cog5||Golgi transport complex subunit Cog5
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 411
Score = 23.8 bits (49), Expect = 7.3
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 144 SKNGCKCIFYERYVRKS 194
SK G +C+F+ER ++K+
Sbjct: 293 SKIGAQCVFWERSLQKA 309
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 23.8 bits (49), Expect = 7.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 231 SPVKLCEDRRVVYRCRLLPVH 293
+P K D V+YRC LLP H
Sbjct: 355 NPNKAMRDP-VIYRCNLLPHH 374
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +1
Query: 142 IVKMAVNVYSTNVTSENLSRHDMLAWVND 228
I+K NVY + +L D++ W ND
Sbjct: 548 IIKSTTNVYLKVNSETSLPTGDIVEWQND 576
>SPBC887.14c |pfh1|pif1|pif1 helicase homolog
Pfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 805
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +1
Query: 148 KMAVNVYSTNVTSENLSRHDMLAWVND 228
K A +V S+N+T + + R L W D
Sbjct: 192 KGASSVISSNITRQGIKRSRTLPWAVD 218
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.4 bits (48), Expect = 9.6
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 102 KFTVKNFLIKGLIHSKNGCKCIFYER 179
K+ KNFLI G + + I+Y R
Sbjct: 338 KYNKKNFLIVGEVTGSSSYGSIYYNR 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,417,830
Number of Sequences: 5004
Number of extensions: 26599
Number of successful extensions: 76
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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