Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_O21
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1332 + 32718584-32718706,32718892-32718960,32719069-327191...    56   7e-09
10_08_0523 - 18518158-18518442,18518786-18518899,18518994-185192...    55   2e-08
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    31   0.30 
06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315     27   2.8  
02_03_0176 + 16010806-16011095,16011983-16012061,16012389-160124...    27   2.8  
01_06_1169 - 35082160-35082292,35082572-35082651,35082727-350829...    27   3.8  
07_03_1211 - 24908295-24908534,24908928-24909005,24909542-249097...    27   5.0  
12_01_0150 + 1155658-1156087,1156319-1156383,1156506-1156569,115...    26   6.6  

>04_04_1332 +
           32718584-32718706,32718892-32718960,32719069-32719155,
           32719865-32719971,32720066-32720187,32720462-32720535,
           32720833-32720946,32721100-32721213
          Length = 269

 Score = 56.0 bits (129), Expect = 7e-09
 Identities = 22/47 (46%), Positives = 33/47 (70%)
 Frame = +1

Query: 193 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRI 333
           + R ++L+W+N  LQ + AK+EE  +GA  CQ MDM+ PG VPM ++
Sbjct: 19  VGRGEILSWINATLQLSLAKVEEAASGAVQCQLMDMVHPGVVPMHKV 65


>10_08_0523 -
           18518158-18518442,18518786-18518899,18518994-18519219,
           18519364-18519470,18519809-18519964,18520100-18520210
          Length = 332

 Score = 54.8 bits (126), Expect = 2e-08
 Identities = 21/47 (44%), Positives = 32/47 (68%)
 Frame = +1

Query: 193 LSRHDMLAWVNDCLQSNFAKIEELCTGAAYCQFMDMLFPGSVPMKRI 333
           + R+++LAW+N  LQ   +K+EE  +GA  CQ MD   PG+VPM ++
Sbjct: 15  VGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKV 61


>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -2

Query: 310 QGTACP*TGNRRHLYTTLRSSQSLTGDNHSPTLAYHAAIDF 188
           QGT+C      RH  T LR++   TG +   +L  H A+D+
Sbjct: 733 QGTSCRGVNWDRHSLTDLRAAVVCTGGHRLASLLRHLALDY 773


>06_03_0403 - 20435349-20435358,20435750-20436204,20436744-20438315
          Length = 678

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = +2

Query: 236 SQTLRRSKSCVQVPPIASSWTCCSLA 313
           S T  RS S     P  SSWTC S A
Sbjct: 632 SATASRSASPTSARPATSSWTCTSAA 657


>02_03_0176 +
           16010806-16011095,16011983-16012061,16012389-16012464,
           16012541-16012630,16012878-16013031,16013172-16013181,
           16013240-16013407,16014087-16014485,16014580-16014990
          Length = 558

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 233 SSQTLRRSKSCVQVPPIASSWTCCS 307
           S +  R S SC   PPI   WT CS
Sbjct: 166 SRKRKRGSNSCSSDPPINLEWTLCS 190


>01_06_1169 -
           35082160-35082292,35082572-35082651,35082727-35082939,
           35083243-35083323,35083381-35083492,35083697-35083786,
           35083986-35084176,35084683-35084762,35085266-35085347,
           35085506-35085590,35086261-35086379
          Length = 421

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -1

Query: 305 NSMSMNWQ*AAPVHNSSIFAKFDWRQSFTHASISC 201
           N + +N+   + +HN+S+   F W  +F+H   SC
Sbjct: 156 NILGINFSRTSYMHNASLLLYFPW--AFSHRQCSC 188


>07_03_1211 -
           24908295-24908534,24908928-24909005,24909542-24909748,
           24909849-24910038,24910195-24910532
          Length = 350

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 162 CIFYERYVRKSIAA*YASVGE*LSPVKLCEDRRVVYRCRLL 284
           C  +  +   + AA   +VG+    ++L  D+ V+Y+CR+L
Sbjct: 169 CASHITFENSAAAAAPGAVGQQAVALRLSGDKTVLYKCRIL 209


>12_01_0150 +
           1155658-1156087,1156319-1156383,1156506-1156569,
           1156988-1157115
          Length = 228

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 224 MIVSSQTLRRSKSCVQVPPIASS 292
           ++ SS T RR  SC+ +PP  SS
Sbjct: 59  LLFSSPTPRRPSSCLSLPPPCSS 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,537,189
Number of Sequences: 37544
Number of extensions: 147231
Number of successful extensions: 323
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)