Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_O21
         (338 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   3.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   3.1  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   4.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.1  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   9.4  

>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 187 ENLSRHDMLAWVNDC 231
           +NL+++ M+ W  DC
Sbjct: 13  KNLNQNQMMIWALDC 27


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 271 LYTTLRSSQSLTGDNH 224
           LY+  RSS+SLT   H
Sbjct: 53  LYSGTRSSESLTAQAH 68


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = -2

Query: 145 LCISPLIKKFLTVNLSLF*TILLCEISYQIC*NFY 41
           L +  L KK L  +      I + E+ +++C  FY
Sbjct: 96  LVMGILCKKTLGTSAGSLLHICMLELGHEVCGRFY 130


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 28  VSVLDKNSNKFDNLSHTAKLFRIKI 102
           V +L++   +FD LS   +  RIKI
Sbjct: 295 VKILNELFARFDQLSERFEQLRIKI 319


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 165 YIYSHFYYV 139
           YI+SHF YV
Sbjct: 113 YIWSHFPYV 121


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,961
Number of Sequences: 438
Number of extensions: 1951
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)