Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_O20
         (413 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos...    25   3.5  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   3.5  
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    25   4.7  
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    25   4.7  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    24   8.1  

>SPBC18H10.03 |tif35||translation initiation factor
           eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 282

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 362 PASQSIGGDALGSNIRFHFPHLRLFQSREDG 270
           P S    G ALG   R+  PHLR    RE G
Sbjct: 161 PVSSRASG-ALGEKGRYIAPHLRAGSGRESG 190


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 330 QSVSSDGLRRRQGW-DPDAESL 392
           Q +  D +RR QGW  PD E+L
Sbjct: 354 QQIKEDEIRRAQGWFFPDKEAL 375


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 22/74 (29%), Positives = 36/74 (48%)
 Frame = -2

Query: 238 VSGTRTVIRKSKVQLRHKKFTPNDF*LCCFCSLKITSTDH*LKNFIH*NELSSVTIAEGA 59
           VS T  + +  ++  R K+F P DF    F   +  + +    N +  +EL+S   AE  
Sbjct: 563 VSSTSLLQQLYRINSR-KQFLPEDF----FLMSEYFNLNEFEANALQESELASHAEAEIN 617

Query: 58  ISYSCKNFTDYRCR 17
           I+Y   NF++ R R
Sbjct: 618 ITYKFDNFSESRPR 631


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 225 EQLFENQKFNYVTKNLHPM-TSDCV 154
           +QLF+NQ FN + K   PM T+D V
Sbjct: 129 QQLFKNQIFNTMEKGSPPMSTTDFV 153


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 390 GSPHRDPILACVAIHRRRRFGIQYQIPLPTSSLVSITRR 274
           G    DP  A  A+H  R FG  Y IP    +LV  + +
Sbjct: 310 GIDFHDPFYASTALHFDRLFG-HYGIPCIVLNLVKSSEK 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,717,809
Number of Sequences: 5004
Number of extensions: 32637
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)