Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_O19
(321 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|... 48 3e-07
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 25 2.1
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 2.8
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual 25 2.8
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 2.8
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 3.8
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 24 5.0
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 24 6.6
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p... 23 8.7
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 23 8.7
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 23 8.7
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 23 8.7
>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 48.4 bits (110), Expect = 3e-07
Identities = 26/71 (36%), Positives = 38/71 (53%)
Frame = +2
Query: 86 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYXQXLEDLQKGGTG 265
SGV VS C ++E+K K RYVVF + D K V + ++ L DL +
Sbjct: 4 SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPE---K 60
Query: 266 ECRYGLFDFEY 298
+CRY ++DFE+
Sbjct: 61 DCRYAIYDFEF 71
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 19 CRCRGVGEVSGVIXT*ITSKNGV 87
CRC G+ ++SG I + SKNG+
Sbjct: 330 CRCAGIKDISGEI---LGSKNGM 349
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +2
Query: 173 RDEKQIDVETVGERNAEYXQXLEDLQKGGT 262
RD+KQ DVE + E +A+ + + GG+
Sbjct: 277 RDQKQQDVEALQEYSAKLSLERDKISSGGS 306
>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 366
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = +2
Query: 95 TVSDACKTTYEEIKKDKKHRYV 160
TV D C + IK KH YV
Sbjct: 316 TVEDFCNNIHSSIKSQFKHAYV 337
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 2.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 92 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDV 196
VT D KT + +K KH+ V YIR K +D+
Sbjct: 113 VTNDDGTKTKVDSDEKKHKHKNVRDYIR-FKHVDI 146
>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 357
Score = 24.6 bits (51), Expect = 3.8
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -1
Query: 312 WHWCVYSKSNRPY--LHSPVPPFCRSSRXCXYSALRSPTVSTSICF 181
W++ Y+ S R Y VPP+CR +R+ + CF
Sbjct: 122 WNFVDYALSLRKYGWTDDVVPPYCRKVLTYKSLGIRTAVYVGAFCF 167
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.2 bits (50), Expect = 5.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 146 KHRYVVFYIRDEKQIDVETVGE 211
KH + F++R K D+ T+GE
Sbjct: 236 KHAPIEFWLRMSKAADIFTIGE 257
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 23.8 bits (49), Expect = 6.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 98 VSDACKTTYEEIKKDKKHRYV 160
V D KT YE+++KD R V
Sbjct: 322 VRDGFKTQYEQLQKDVSRRAV 342
>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 205
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = +2
Query: 140 DKKHRYVVFYIRDEKQIDVETVGERNAEYXQXLEDLQKGG 259
D+K + Y++D + +E + ER E L GG
Sbjct: 90 DEKGIPFILYVKDSAKKQLEKIAERKPEENSVLRVTVDGG 129
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +2
Query: 113 KTTYEEI-KKDKKHRYVVFYIRDEKQIDVET 202
K Y++I +K+ + Y+++EKQID+ T
Sbjct: 4 KINYKDITQKEMFNEIFKEYVKEEKQIDLGT 34
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 23.4 bits (48), Expect = 8.7
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 83 ASGVTVSDACKTTYEEIKK 139
A+ + +DACK+ +E IKK
Sbjct: 401 ANHLWTADACKSHFERIKK 419
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 23.4 bits (48), Expect = 8.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = +2
Query: 176 DEKQID--VETVGERNAEYXQXLEDLQKGGT 262
D+K+I V + ERNA+ LED+Q T
Sbjct: 2016 DKKRIQSSVSRLEERNAQLRNQLEDVQASET 2046
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,187
Number of Sequences: 5004
Number of extensions: 16412
Number of successful extensions: 49
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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