Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_O16
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    25   7.3  
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    24   9.6  

>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 441 FYXLTTGTSNTSCFKAFLPGNH 376
           F+   +G++   C KAFL GN+
Sbjct: 188 FHPEKSGSAGLRCLKAFLTGNY 209


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 269 GMTPRKMCLCIRLPSPVTTH 328
           G+TP+ + +  +LP PV +H
Sbjct: 268 GVTPQNVVMMSKLPEPVYSH 287


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,899
Number of Sequences: 5004
Number of extensions: 21857
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)