Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP09_F_O16
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 73 1e-13
08_01_0202 - 1638978-1639571 73 1e-13
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 30 1.0
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427... 28 3.1
08_02_0503 - 17848739-17849004,17849109-17849268,17849368-178496... 28 4.1
08_01_0229 + 1834102-1834358,1834442-1834901 28 4.1
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 28 4.1
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008 27 5.4
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 27 7.2
02_03_0120 + 15463163-15465250 27 7.2
08_02_1554 + 27841801-27842007,27842282-27842455,27842554-278426... 27 9.5
04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501 27 9.5
03_05_0433 - 24245560-24245946 27 9.5
>02_01_0158 - 1103461-1104186
Length = 241
Score = 72.9 bits (171), Expect = 1e-13
Identities = 39/81 (48%), Positives = 51/81 (62%), Gaps = 1/81 (1%)
Frame = +1
Query: 205 AEKVSGTVKWFNVXSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 384
A + GTVKWFN G+GFI+ +D ED+FVHQ++I + RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSIKAD----GFRSLAEGEQVEFAISE 59
Query: 385 GEKG-FEAAGVTGPGGEPVKG 444
E G +A VTGP G VKG
Sbjct: 60 SEDGRTKAVDVTGPDGSFVKG 80
>08_01_0202 - 1638978-1639571
Length = 197
Score = 72.5 bits (170), Expect = 1e-13
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +1
Query: 205 AEKVSGTVKWFNVXSGYGFINRNDTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVA 384
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ + RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSLKSD----GYRSLNDGDVVEFSVGS 58
Query: 385 GEKG-FEAAGVTGPGGEPVKG 444
G G +A VT PGG + G
Sbjct: 59 GNDGRTKAVDVTAPGGGALTG 79
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +1
Query: 355 GEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 444
GE+ E ++ GE E V GPGGEP G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>03_06_0609 -
35042276-35042388,35042476-35042527,35042624-35042725,
35043546-35043745,35045258-35045336,35045541-35045595,
35045947-35046122,35046386-35046988,35047077-35047265,
35048150-35048201,35048289-35048356,35048873-35048911,
35048912-35048970,35049639-35049782,35050136-35050238,
35050368-35050467,35050596-35050612
Length = 716
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 420 TSNTSCFKAFLPGNHGKLHRLSVADRAHSLTWVVTGDGSLMHK 292
T N ++ FLP G + L + D ++ W ++ + SL HK
Sbjct: 293 TENDCAWQRFLPS--GPIALLPIGDNYSNIVWTMSPEESLRHK 333
>08_02_0503 -
17848739-17849004,17849109-17849268,17849368-17849691,
17849787-17850209
Length = 390
Score = 27.9 bits (59), Expect = 4.1
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 274 DTKEDVFVHQTAIARNNPRKAVRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKG 444
D +D + + A A NP A R G +A + + + G++ AGV G VKG
Sbjct: 106 DIADDQVLVRVAAAALNPVDAKRRAGKFKATD-SPLPTVPGYDVAGVVVKAGRKVKG 161
>08_01_0229 + 1834102-1834358,1834442-1834901
Length = 238
Score = 27.9 bits (59), Expect = 4.1
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = -2
Query: 102 GVIGERRWWQRW 67
GV+GERR W+RW
Sbjct: 134 GVVGERRRWRRW 145
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +1
Query: 337 VRSVGDGEAVEFAVVAGEKGFEAAGVTGPGGEPVKGSP 450
VR G G A FAV G A G GGEP SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
Length = 1058
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 438 YXLTTGTSNTSCFKAFLPGNHGKLHRLSVADRAHS 334
+ + +NTS LPG+ GKLHRL + D ++
Sbjct: 102 FLIVLNLANTS-LTGTLPGDIGKLHRLELLDLGYN 135
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +1
Query: 304 TAIARNNPRKAVRSVGDGEAVEFAVVAG 387
TAI N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>02_03_0120 + 15463163-15465250
Length = 695
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 307 AIARNNPRKAVRSVGDGEAVEFAVVA--GEKGFEAAGVTGPGG 429
++ R N AV S GEA VA KGF++ V G GG
Sbjct: 357 SVRRKNQEHAVASEDMGEATLSMEVARAATKGFDSGNVIGVGG 399
>08_02_1554 +
27841801-27842007,27842282-27842455,27842554-27842653,
27843273-27843725,27843936-27844469,27844500-27844580,
27844690-27844781,27844890-27844963,27845071-27845293,
27845429-27845522,27845607-27845761,27845899-27846129,
27846803-27847003,27847257-27847382,27847497-27847558,
27847775-27847892,27848040-27848324,27848475-27848513
Length = 1082
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 305 LPSPVTTHVRLCARSATERRWSLPW 379
LP + H+R A +AT RWSL W
Sbjct: 35 LPPVLALHLRAAA-TATAARWSLAW 58
>04_01_0564 - 7222788-7223162,7223258-7223401,7223500-7224501
Length = 506
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 87 RRWWQRW*NTPRPLLDVHRFSS 22
RRW W +TP L+D H SS
Sbjct: 81 RRWRPLWRSTPLVLVDAHLLSS 102
>03_05_0433 - 24245560-24245946
Length = 128
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -2
Query: 372 KLHRLSVADRAHSLTWVVTGDGS 304
++ RLS+ A + W +TGDGS
Sbjct: 55 EVQRLSLTSEADRIKWKLTGDGS 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,602,950
Number of Sequences: 37544
Number of extensions: 169000
Number of successful extensions: 708
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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