Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_O15
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...   105   5e-24
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    38   0.001
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   2.1  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    26   4.9  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    26   4.9  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   6.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   6.5  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    25   8.6  

>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score =  105 bits (252), Expect = 5e-24
 Identities = 54/160 (33%), Positives = 95/160 (59%)
 Frame = +3

Query: 36  KMEMDKENIVQAVVIMDTFNSNFSPITDNKPMGFLEVAGVPLIDYVLESLALGGVGEAIL 215
           K+E  K + +QA+V+ D++N  F P+T +KP   L +A  PLI+Y  E LAL GV E  +
Sbjct: 10  KLEKPK-HALQAIVLSDSYNYRFRPLTLDKPRCLLPLANTPLIEYTFEFLALAGVQEVYV 68

Query: 216 FCCQNGQKIKEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLA 395
           FCC +  +I+E+++K + N  L S    +  ++S    ++GD +RELD+  L+   F+L 
Sbjct: 69  FCCAHAGQIREYIEKSKWN--LPSSPFSVNTIVSRESLSVGDALRELDSKQLITSDFILV 126

Query: 396 GINSITNMNFASLLEQHKQTCKKDXGTAMTLVYKKLSWEH 515
             + ++N+    +L++H++  + D    MT+V ++ S  H
Sbjct: 127 SGDVVSNVPLNEVLKEHRKRREDDKNAIMTMVVREASPFH 166


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 28/129 (21%), Positives = 60/129 (46%)
 Frame = +3

Query: 63  VQAVVIMDTFNSNFSPITDNKPMGFLEVAGVPLIDYVLESLALGGVGEAILFCCQNGQKI 242
           ++A++++  F +   P+T   P   +E    P+I + +E+LA  GV + +L      + +
Sbjct: 1   MKALILVGGFGTRLRPLTLTLPKPLVEFGNKPMILHQVEALAAAGVTDIVLAVNYRPEIM 60

Query: 243 KEHVQKHQDNKSLWSLTMDIQILMSDTCQTMGDVMRELDAAALLKGYFVLAGINSITNMN 422
            E ++K++   ++ ++T  ++   ++   T G +    D  A     F +   + I    
Sbjct: 61  VEALKKYEKEYNV-NITFSVE---NEPLGTAGPLALARDILAKDHSPFFVLNSDVICEYP 116

Query: 423 FASLLEQHK 449
           FA L   HK
Sbjct: 117 FADLAAFHK 125


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -3

Query: 412 VMLLIPASTKYPFSKAAASNSLITSPMV*QVSDIKIWI 299
           + L +PA ++Y FS      S++ SP++   S++ + +
Sbjct: 134 ITLSMPAKSEYFFSSPLVKKSIVQSPIIANGSELNVGV 171


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -1

Query: 405 Y*YQLAQNILSAKQQHLTLSSHHPWSDK----YLTSKSGY 298
           Y   +AQ ILS+ +  +TLS+ + W       Y T+KSG+
Sbjct: 228 YSVMIAQAILSSSECMMTLSNIYSWISTHYPYYRTTKSGW 267


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 363 AALLKGYFVLAGINSITNMNFASLLEQHKQ 452
           A+L K +F+    N I N N  SL +Q +Q
Sbjct: 334 ASLSKAFFIFDNQNEIFNFNSDSLQQQFRQ 363


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 271 TSLCGVLLWISRF*CQILVRPW 336
           +S+CG   + S   C+ LVRPW
Sbjct: 339 SSICGKRNYFSSVICKELVRPW 360


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -3

Query: 505  ESFL*TKVIAVPXSFLHVCLCCSRRLAKFILVMLLIPASTKYPFSKAAASNSLI 344
            + FL T  +     +L +    S+ L K +LV  L P+S   PFS  A+   L+
Sbjct: 998  KGFLSTPNVQADEKYLKLRCYFSQLLEKVLLVQNLHPSSEVLPFSGRASCWKLL 1051


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -2

Query: 128 WFIVCYWRKITVKSVHNNNSLYD 60
           W  + YWR++  +   N N +YD
Sbjct: 406 WTNLYYWREMLQRPSKNENGIYD 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,431
Number of Sequences: 5004
Number of extensions: 42021
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)