Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP09_F_O14
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    38   0.006
AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid tr...    27   8.1  

>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
 Frame = -1

Query: 539 ELLDILDMY-SLCILNSGSXTRLTKPGEVISAIDLSICTPQLASSLSWSTLCSTYNSDHY 363
           EL +++D++  L I N    TR       IS+ D++ICT  LA+   WSTL     SDH 
Sbjct: 59  ELAELIDLHPDLIIQNEQVHTRADTYS--ISSPDITICTADLATKCHWSTLYK-LGSDHI 115

Query: 362 PI 357
           P+
Sbjct: 116 PM 117


>AF026214-3|AAB71312.2|  493|Caenorhabditis elegans Amino acid
           transporter protein 3 protein.
          Length = 493

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 491 PSLKCTGYTCLRYLIIHNHNYXILNYPQ 574
           P++  TG   L YL++ N+ Y ++NY Q
Sbjct: 358 PAVILTGLLSLLYLLLSNNIYSLINYIQ 385


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,700,425
Number of Sequences: 27780
Number of extensions: 247500
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)